Gossypium raimondii: 105785382
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Entry
105785382 CDS
T04129
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105785382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105785382
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
105785382
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
105785382
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GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
EXOSC1
Motif
Other DBs
NCBI-GeneID:
105785382
NCBI-ProteinID:
XP_012466910
UniProt:
A0A0D2Q6V8
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Position
11:25099475..25101986
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AA seq
321 aa
AA seq
DB search
MRGLKLPLSQTQRVRLQRAFEKLQSLSAMANSDASVTVADTIPVNYEDAFLKGHGTTDLN
GELVATVCGVVERVNKLVYVRSLRARYKPEVGDVVVGRVVEVAQKRWRLEINFSQDAVLM
LSSMNMPDGIQRRRTALDELNMRSIFEENDIVCAEVRNFQHDGSLQLQARSQKYGKLEKG
QLLIIDPYLVKKSKQHFHHLEEFGIGLILGRNGYIWIGEHVEARDSMVIDQAKSIEQSTV
VEGINQAYTPLEMRQNICRIGNAIRVLTSLGFNVDLNLIMETVELSSSLKIDIHDMLGSE
FHVLVAEMEAERRSLTTKRKR
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgagaggattgaagttaccgttgagccaaacccaaagggtaagacttcaaagggcattc
gaaaagcttcagtctctatctgctatggccaattccgacgcttccgttaccgtcgccgat
actattcctgtcaactacgaagacgcttttctcaagggacatggaacaacggacctcaac
ggcgaattggtggcaactgtgtgcggcgttgtggagcgcgtcaacaaactggtctacgta
cgctccttacgcgctaggtacaagccagaggttggggatgtcgtagtgggacgtgtagtc
gaggttgctcaaaagcggtggagattagaaattaattttagccaagatgcggttttaatg
ctttcttcaatgaacatgcctgatggtattcagagacggcgaactgctttggatgaactc
aacatgcgaagtatatttgaagagaatgatattgtctgtgctgaggttcgtaatttccag
catgatggcagcttacaactccaagcaagaagccaaaagtatggaaagcttgagaaaggc
cagttgctcataattgatccttacctggtgaagaaaagcaaacagcatttccatcacctt
gaagagtttggaattggcttgatacttggacgtaacggatatatatggattggcgaacat
gttgaagctagagacagtatggtaatcgatcaagctaaaagtattgaacaatctacagtt
gttgaaggaataaaccaagcttataccccgctagagatgaggcaaaacatatgcagaatt
ggaaatgctatccgagtattgacgagtttaggtttcaatgtagatttaaatttgatcatg
gagacagttgagttgagtagctcacttaagattgacatacatgacatgcttggttcagag
tttcatgttctggttgcagaaatggaggctgaacgaagaagcttgactacaaagcggaaa
agatga
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