Gossypium raimondii: 105785510
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Entry
105785510 CDS
T04129
Name
(RefSeq) cell division cycle protein 48 homolog isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
gra
Gossypium raimondii
Pathway
gra04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
105785510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105785510
03009 Ribosome biogenesis [BR:
gra03009
]
105785510
04131 Membrane trafficking [BR:
gra04131
]
105785510
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gra04147
]
105785510
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
105785510
Ribosome biogenesis [BR:
gra03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
105785510
Membrane trafficking [BR:
gra04131
]
SNARE
SNARE associated proteins
Others
105785510
Autophagy
Aggrephagy
Other aggrephagy associated proteins
105785510
Exosome [BR:
gra04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
105785510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_33
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_17
AAA_28
Mg_chelatase
ATPase_2
AAA_18
Parvo_NS1
IstB_IS21
ABC_tran
AAA_lid_PRS2_C
Viral_helicase1
NACHT
AAA_7
NB-ARC
AAA_24
TsaE
DUF815
Zeta_toxin
Sigma54_activat
Vps4_C
Sigma54_activ_2
Zot
Phage_Mu_Gp48
Motif
Other DBs
NCBI-GeneID:
105785510
NCBI-ProteinID:
XP_012467061
UniProt:
A0A0D2QDU7
LinkDB
All DBs
Position
1:27765631..27770623
Genome browser
AA seq
805 aa
AA seq
DB search
MSKQAESSDSKGTKRDFSTAILERKKAPNRVVVDEAINDDNSVVSLHPDTMEKLQLFRGD
TILIKGKKRKDTICIALADDTCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEEVDLERIAKDTHGYVGADLAALCT
EAAFQCIREKMDVIDLEDESIDAEILNSMAVSNDHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRHQI
FKACLRKSPIAKEVDVKALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSEN
PEAMEEDVEDEVAEIKPAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAE
TGSRTAASDPFAASAGGADEDDLYS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagcaagccgaatcctccgactcgaaggggactaagagggattttagtacggca
atcttggaaagaaagaaggctccgaatcgagtcgttgtcgatgaggcaatcaacgatgat
aactccgttgtttctcttcatcctgataccatggaaaaactccagctgtttcgcggtgac
actatcctgatcaaggggaagaagaggaaggatactatctgcattgctcttgcagatgat
acatgtgatgaaccaaagatcaggatgaacaaggttgtcaggtcaaacttgagggttagg
cttggtgatgttgtctccgtgcaccagtgtcctgatgttaagtatggaaagcgtgtacac
atattgcctgtggatgacacaattgaaggggttactggaaatctctttgatgcatacctg
aaaccttactttcttgaagcataccggccggtgaggaagggtgatctcttccttgttaga
ggtggaatgagaagtgtagaattcaaagttatcgaaactgatcctcccgagtactgtgtt
gtcgcaccagacactgagatattctgtgagggagagcctgtcaggagagaggatgagaac
agattagatgaggtaggttatgatgatgttggtggagtgagaaaacagatggctcagatt
cgggaactagtggagcttccattgaggcatccacagctcttcaaatcaattggtgtgaag
ccacctaaaggaattttgctttatggacctcctgggtctggaaagactttgattgctcgt
gctgttgcaaatgaaactggcgctttctttttctgcatcaatggtccggagatcatgtca
aaattggctggagagagtgagagcaatctcaggaaagcatttgaggaagcagaaaagaat
gcaccatctattatatttattgatgaaattgactcgattgcacccaagcgtgagaagacc
catggtgaagttgaaaggaggattgtttctcagctgttaacattaatggatgggcttaaa
tcccgtgcacatgttattgttattggagccacaaatcgtcccaatagcattgatccagct
ctcagaaggtttggaagatttgatagggagattgatattggcgttcctgatgaagtcggc
cgtcttgaggttcttcgtatccacacgaagaatatgaagttggctgaagaggttgattta
gaaagaattgccaaggacacccatggttatgttggtgctgatcttgcagcactttgtact
gaggcagcatttcagtgcatcagggaaaagatggatgtgattgacttggaagatgagtcg
atagatgcggagatactcaactctatggcagtctcaaatgaccacttccagactgctctt
ggaacaagcaatccgtcagcgctgcgtgaaactgttgttgaagtgcctaatgtcagttgg
gaagatattggtggccttgagaatgttaaaagagagcttcaagagactgttcaatatccg
gtggagcatcctgagaagtttgagaagtttgggatgtcaccttcaaagggagtactattt
tatggccctccaggatgtggtaaaacacttttggctaaagctattgccaatgaatgtcag
gcaaacttcattagtgtcaagggacctgaattgcttacaatgtggtttggagagagtgag
gctaatgtacgtgaaatttttgacaaggcacgccagtccgcaccttgtgtcctcttcttc
gatgaacttgattccattgctacccagagaggaagcagtgtaggtgatgcagggggggca
gctgatagagttttgaaccaacttcttaccgagatggatggcatgtctgccaagaaaaca
gttttcatcattggagctaccaaccgacctgacattatagatccagcacttcttcgtcca
ggtcgtcttgatcagttgatctatattcctctccctgatgaggagtcacgccatcaaatc
tttaaggcctgtttgaggaagtcaccgattgcaaaagaggttgatgtcaaagctcttgcc
aaatatactcaaggctttagtggagcagacattacggaaatttgtcaacgtgcatgcaaa
tatgctataagagaaaacattgaaaaggatatcgagagagaaaggaggaggagtgagaat
cctgaagccatggaagaagatgttgaagatgaagttgcagaaatcaagcctgcacatttt
gaagaatcgatgaagtttgctcgtaggagtgtgagtgatgcggatatccgcaagtaccag
gcatttgcacaaacattgcagcaatcaaggggatttggaagtgaatttaggtttgctgaa
actggttcaaggactgcagcatctgatccttttgcagcttctgctggtggagctgatgaa
gatgacctttacagttaa
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integrated database retrieval system
