Gossypium raimondii: 105785842
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Entry
105785842 CDS
T04129
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
gra
Gossypium raimondii
Pathway
gra00040
Pentose and glucuronate interconversions
gra01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
105785842
Enzymes [BR:
gra01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
105785842
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
105785842
NCBI-ProteinID:
XP_012467460
UniProt:
A0A0D2Q8R7
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Position
1:complement(40838584..40840435)
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AA seq
406 aa
AA seq
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MAIPLSLFLLVFSFLAPSIFSASPVQDPEQVVRQVNESIRNATAARRKLGFLSCGTGNPI
DDCWRCDPNWAKNRKRLADCGIGFGKRAIGGRNGKFYVVTDPSDRDPVNPKPGTLRHAVI
QDKPLWIIFARDMVIKLKAELLMNSFKTIDGRGVSVHIAGGPCITIQYATNIIIHGINIH
DCKRGGNLYVRDSPTHYGWRTTSDGDGVSIFGSSHVWVDHCSLSNCNDGLIDAIHGSTAI
TISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDY
THWIMYAIGGSANPTINSQGNRFLAPDKMNNKEVTKRENTPRKKWKKWNWRSRGDLMLNG
AFFTPSGTGALSSYAKASSLSARPSSLVSSVTAGAGALVCRKGRRC
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcccattgtccctctttctactggtattttctttcttggctccctccattttc
tcggcctctccagttcaagaccctgagcaagttgttcgacaagtcaatgaaagcataagg
aatgctacggcagctaggaggaagctgggatttctctcatgtggaaccgggaaccccatt
gacgactgctggcggtgcgaccctaattgggcaaagaaccgtaagaggctagccgactgt
ggcattggattcggtaagcgtgccattggtggccggaacggaaaattttatgttgtgacg
gaccccagtgaccgtgatccagtgaatcccaaacccggtactcttaggcatgcagttatc
caagataaacctttgtggatcatatttgctcgtgacatggtgatcaaactgaaggctgaa
ttgctgatgaactcgttcaagacgatcgacggccgaggtgtcagcgtccacatcgccggt
gggccatgcattactatacagtacgcgaccaacattataattcatgggattaacatacat
gattgcaagaggggagggaatctttacgtgagggattctcctacgcattatgggtggagg
actacatcggacggtgacggggtatcgatatttgggagcagccacgtttgggtggaccat
tgctccttgtctaattgcaatgacgggcttatcgatgccatccacggatccaccgccatc
accatttctaacaattacatgacacatcatgataaagtcatgctcctaggtcacagtgac
tcttacacccaagacaagaacatgcaagtcaccattgccttcaaccattttggagaaggg
cttgtgcagagaatgcctagatgcaggcatggatattttcacgtggtgaacaatgattac
acgcattggataatgtatgcaatcggtggcagtgcaaatccgacgatcaacagccagggg
aacagatttcttgcaccagataaaatgaataacaaagaggtgactaaacgagagaatacg
ccgcggaaaaaatggaagaaatggaattggaggtcaagaggggatttgatgttaaatgga
gcattcttcacaccttccggcaccggagccttgtcgagttatgcgaaggcgtcgagcctg
agtgcaagaccgtcttcgcttgtcagctcagtcacagcaggggcgggtgcactggtttgc
aggaagggcagacgttgctag
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