Gossypium raimondii: 105786556
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Entry
105786556 CDS
T04129
Name
(RefSeq) uncharacterized protein LOC105786556 isoform X1
KO
K06100
symplekin
Organism
gra
Gossypium raimondii
Pathway
gra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105786556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gra03021
]
105786556
03019 Messenger RNA biogenesis [BR:
gra03019
]
105786556
Transcription machinery [BR:
gra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105786556
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105786556
U7-dependent histone pre-mRNA processing factors
105786556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
Motif
Other DBs
NCBI-GeneID:
105786556
NCBI-ProteinID:
XP_012468505
UniProt:
A0A0D2QJK2
LinkDB
All DBs
Position
1:complement(52039516..52049435)
Genome browser
AA seq
1337 aa
AA seq
DB search
MVGIMNPVSREKLESLSSSVKFAIDLGSKLELCRQLKHDLLEEDAADLSEFLPRIFDLYS
DPSGPVRKFATEIIGEIGVKHLEFVPEIAPFLITVLEDATPAVARQSIACSIDLFRHTLE
QIAIRGLYSSELDSDLESSWSWMLKLKEKIYSIAFQPGSGGIRLVALKFVEAVILLYTPN
PNGSLEPPPNEGTSIEFNITWLRGGHPLLNVGDLSIEASQRLVLLLDQLRFPTVKSLTTS
VIVVIINSLSAIAKKRPAYYGRILPVLLSLDPPSFVIKGVHVYGAHHALKNALLSCLKCT
HPSAAPWRERILGALKEMKAGGLADLALNQVHKINGSVEEEKDDSLLIKEEKPLTKAYDA
AGSNVGRKRSGTEGSSDLAEKDEVSGKRVKATPSVSEESTKELNRNITVSQGDISSTQSS
TRKVDVDTGPVQQLVGMFGALVAQGEKAVGSLGILISNISADLLAEVVMANMCNLPPTHP
HTDTDDELLEDMCIVGSDTQAKYPPSFLADVISLSSTFPPIASMLNSQQSVPNKIVIQKT
EGEEEVDVVADPNSALAYAGMAHEDENALLATDLPVSSNIVLPGMKIDPPTPSDIHDTGN
LESGIPGLDSSFRNDGLSDTQAASSLVSTDIEDASQEQATSFGGKSPLHVRPSISIDRSE
ELSPKAAVTDSSSMVSSTATSVVSSCPFVLPKMSAPVVNLSEDQKDDVQKLAFVRIVEAY
KQIAVAGGSQVRSSLLAYLGVELPSELELQKVLREHILSDYINHEGHELTLRVLYRLFGK
AEDESDFLSCTTAASAYETFLLAVAETLRDSFPPSDKSLSKLLGEAPRLPKSVLNLLGCL
CSPGISEKAEESQSGDRVTQGLSTVWSLILLRPPIRDVCLKIALQSAVHHLEEVRMKAIR
LVANKLYPLQSIAQQIEEFAREMLLSVVNVDATERTGAEGLISESHKDSDLEKSSNEHQS
MSSISKDISADVHQSETSHSGSSPSVPEAQRCMSLYFALCTKKHSLFGQIFIIYGSASKE
VKQAIHRHIPILVRTMGLSSDLLEIISDPPSGSENLLMQVLQTLTEGTVPSAELIFTIKK
LFDSKLKDVEILVPVLPFLPGDEVLLLFPHLVNLPLDKFQAVLTRLLQGSAHSGPVLTPA
EVLIAIHGIVPERDGIPLKKVTDACNACFEQRHIFTQQVLAKVLNQLVERIPLPLLFMRT
VLQAIGAFPALVEFIMEILSRLVSKQIWQNPKLWVGFLKCALLTKPQSFSVLLQLPPPQL
ENALNRTAALKAPLVAHASQQNIRNSLPRSMLAVLGLAPDTQSSSQAQTSQAHTGDTSNS
EKDAAVTEKSKESSSAI
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atggtagggatcatgaatccagtttcgagagaaaagctcgagagtttatccagctcagtg
aagttcgctattgacttaggttccaagctagagctttgtcgtcaactgaagcatgattta
ttggaggaagacgctgctgatttgtccgagttccttcctcgtatcttcgacctttactct
gacccgtccggtccggttcgcaagtttgctaccgagattattggtgaaattggagtgaag
caccttgaatttgtacctgaaattgcaccatttctgataactgttttggaggatgctaca
cctgctgttgctcgacaatctattgcttgcagcattgatttgtttcgccatactctcgaa
cagattgcaattcggggtctttactccagtgaattggacagtgatcttgaatcatcgtgg
tcatggatgttaaagttgaaggagaagatatattctatagctttccagccaggaagtggt
gggataagattggtggcactgaagtttgttgaagcagttattcttctttatactcctaac
cctaatggctctctggagccccctcctaatgaaggtacctctatagagtttaacataact
tggcttcgtgggggccatcctttactcaatgttggggatttgtcaattgaagctagccaa
cgtttggttttgttgcttgatcagcttagatttcctacagtaaaatctctcaccacctct
gtgattgttgtgattattaacagtctttcagcaattgcaaagaaaaggcctgcatattat
ggacgtattctaccagttttgctcagtttggatcccccaagctttgttatcaaaggggtt
catgtctatggagcacatcatgctttgaaaaatgccttactctcatgcttgaaatgcacg
cacccgagtgctgcaccgtggcgggaacgtatacttggtgccttgaaagagatgaaagct
ggaggactggcagatctagctctcaatcaagttcataaaattaatggaagtgtagaagag
gaaaaagatgattctttgcttattaaggaagaaaagcccttgactaaagcatatgatgct
gctggtagcaatgtgggtaggaaaagatctggaactgagggcagtagtgatttggctgaa
aaagatgaggtgtctggcaaacgtgtcaaggcaacacctagcgtctcagaagagtcaaca
aaagagttaaacaggaatataaccgtgtctcaaggtgatatttcatcaactcaatctagc
acaagaaaagtagatgttgataccggaccagtacagcaacttgttggcatgttcggtgcc
ttggttgctcaaggagaaaaagctgtgggatctttggggattcttatttcaaacatatct
gctgacttgctggctgaggtagtgatggctaacatgtgtaaccttcctcctacacatcct
cacactgacactgatgatgaattgctggaggatatgtgcatagttggaagtgacactcaa
gccaagtatccaccgtcatttttagctgatgtcatttcactatcaagtactttcccgccg
atagcctcaatgctgaactcccagcaatcagttcccaataaaatagtgatacagaaaaca
gaaggggaggaagaggtggatgttgtggctgaccctaatagtgctcttgcatatgctgga
atggctcatgaagatgaaaatgctctcttggccactgatttacccgtttcgtctaacatt
gttttgcctggaatgaagattgatccacctactccatctgatatccatgatacaggcaat
cttgaaagtggcataccgggtttggattcttcttttcgtaatgatggactgtcagatacc
caagctgcttcctcattagtctctactgatatagaagacgctagtcaagaacaagctaca
agttttggtggaaagtcacctttgcatgtacgtccatcaatttcaatagataggtctgag
gagcttagtccaaaagcagctgttactgattccagcagcatggtttcctcaacagcgact
tctgttgtttcatcctgtccttttgtcttgcccaagatgtcagcacctgttgtcaatctt
tccgaggatcagaaggatgatgtgcaaaagttggcttttgtacgaatcgttgaggcatat
aagcaaatagcagtagctggaggctcacaagttcgttcttctctgcttgcttacctgggg
gttgagttgccatcagagttagaactacagaaggttcttcgagaacacattttgtcagat
tatataaatcacgagggacatgagttgacattgcgtgtcctctataggttgtttggaaag
gcagaagatgaaagtgatttcctctcatgtacaactgctgcttctgcatacgaaacattc
cttctggctgtcgctgaaactcttagggactcttttccgccttcagacaaatctttaagt
aaactacttggcgaggctcctcgcctgcctaagtcagttttgaatttattagggtgtctg
tgttcacctggaatttcagagaaagctgaggagtcacaaagtggagatagagttactcaa
ggcctcagcactgtatggagcctaattctattgagacctcccattcgagatgtgtgcttg
aaaattgctttgcagagtgctgttcatcacttggaggaagtccgaatgaaagcgatacgc
ctggtagcaaataagctgtaccctttacaatctattgctcaacaaatagaagaatttgca
agggaaatgctgctctctgtagtaaatgttgatgctacagaaagaacaggtgctgaagga
ttaatcagtgaatcacataaggattctgatttggaaaagtcatcaaatgagcatcagtca
atgagttccattagtaaagacatctctgctgatgttcatcagtcagaaacatctcatagt
gggtcatccccttctgtccctgaggctcagcggtgcatgtctctgtattttgctctttgt
acaaagaagcactctctttttggccaaatatttattatctacggtagtgcgtcgaaggaa
gttaagcaggcaatccatcgtcatattccaatactagtccgtactatgggcttgtcatct
gaccttcttgaaattatttcagatcctcctagtggaagtgagaatcttctgatgcaggtt
ttgcagacactgacagaagggacagttccttctgcagaattgatatttaccattaagaag
ttatttgattcaaaactgaaggatgttgaaattctagttccagtattgccattcctacca
ggagatgaggttttgctgcttttcccccatcttgtaaatcttccgctggataagttccaa
gctgtgcttacccgtttgctacagggatctgctcactctggtccagtgctcactccagct
gaagtactaatcgctattcatggcattgttcctgaaagagatggaattcccttgaagaag
gtcactgatgcatgtaatgcttgttttgagcaacggcatatattcactcagcaggttctt
gcgaaggtcttaaatcagttggttgagcggattcctcttcctttgttgtttatgcgtacc
gtattacaagccattggtgcttttcctgcactggtggaattcataatggagattctttct
cgtcttgtaagcaagcaaatatggcaaaacccaaagttgtgggtaggatttttgaaatgt
gcactcttgacaaagcctcaatctttcagtgtgctgcttcagctacctcctccacaactt
gaaaatgcactgaacaggactgcagcactcaaagctcctttggttgctcatgctagccaa
cagaatattcggaattcacttcctagatctatgttggcagttttgggacttgctccggat
actcagtcctccagtcaggcacagacaagtcaggctcacaccggagatacaagcaactcc
gagaaggatgctgcagtgacagagaaatcgaaagaatcatccagtgctatctga
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integrated database retrieval system
