Gossypium raimondii: 105786644
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Entry
105786644 CDS
T04129
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105786644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105786644
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105786644
mRNA degradation factors
5'-3' decay
Decapping complex
105786644
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Nnf1
Motif
Other DBs
NCBI-GeneID:
105786644
NCBI-ProteinID:
XP_052485584
LinkDB
All DBs
Position
1:complement(2808841..2815038)
Genome browser
AA seq
793 aa
AA seq
DB search
MDASENLKRFGDTSSGDAVFDASQYAFFGKDVLEEVELGGLDDEEDVPAVGLEDEEEFLF
DRDEGEVLRSLSDVDDLTNTFSKLNTAISGPRGSRIIGDGGSRQSSSAAEWTHGEEFPHW
LDQQPLETESIPDGKCWSSQPLANLDAKHLYRTSSYPEQQQQQQQLQQQQQYHQHFSSEP
ILVPKSSYISYPPPDGRSPQASPNQHSGHLNIPYMAGGPQMASSPNLSGFPNSQLQLPGL
HHGPNYRGNMPQFAPGLSVSSQPSNQWGSRPKLYGDNSSVLNNMLQQQLTHQNGLIPPQL
MPQLQSHQQRLQHPVQPSFSHFSGIQSQQFNPHLSPSPPVMNKVEAILGIGDLRDQRAKS
AQKGRQSLRGFDSGALKSDFGWPQFTSKYMSTDEIEGILRMQLVATHSNDPYVDDYYHQA
CLARKSAGAKLRHHFCPTHLRDLPPRARANTEPHAFLQVDALGRLPFSSIRRPRPLLEVD
PPNSSAVTNNDQKASDIPLEEEPMLAARVTIEDGLCLLLDVDDIDRFLQFNQLQDGGAQM
RQRRQVLLEGLGALLQLVDPLGKSGNTDELAQKDDLVFLRIVSLPKGRKLLARFLQLLPP
GGELMRIVCMSIFRHLRFLFGGLPSDPGAAETTINLARVVSSCVHSMDLRALSVCLASVV
CSSEQPPLRPLGSPAGDGASFILKSVLDRATKLMTDSRAAGNYNTTNLSLWKASFDEFFN
LLTKYCINKYDTVMQSLRMQAKPNMAIDESDSAKAIKREMPVDLLQACLPHLNDQQKKQL
LDLSQRPMLVGQS
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggatgcttctgagaatcttaagcgatttggcgatacttcttcaggagatgcagtattt
gatgcatcacagtatgcattttttggaaaagatgttcttgaggaagttgaattgggggga
ttagatgatgaggaggatgtacctgcagtcggacttgaggatgaggaggagtttttgttt
gatagagatgagggtgaagttttgagatccttatcggatgttgatgatcttactaataca
ttttcaaagttgaacacagccattagtggaccaagaggctcaaggataattggtgatggg
gggtccagacaaagttcatctgctgccgaatggacacatggggaggaatttcctcactgg
cttgatcagcagcctcttgaaactgaaagtattcctgatggcaaatgctggtcatcacaa
ccattggccaatttggatgcaaagcatctctacaggacatcctcgtaccctgagcagcag
cagcagcagcagcaactacaacaacaacaacagtaccaccaacatttctctagtgaacca
attttagttccaaaatcttcttatatttcttaccctccccccgatggcagatctcctcag
gcgtcaccaaaccaacattctggacacctaaatattccttatatggctggtggaccacag
atggcatcttcacccaacctctctggcttcccaaattctcagcttcaactgccaggctta
caccatgggccaaattatcgtgggaatatgcctcaatttgctcctggtctgtctgtcagt
agtcagccgtcaaatcaatgggggagcaggccaaaactgtatggagataattccagtgtt
ttgaacaatatgttgcaacaacagttaactcatcaaaatggtttgattccaccacagtta
atgccacagctgcagtcgcaccagcagagactgcagcatcctgttcagccttcatttagc
cacttttctgggattcagtcacaacaatttaatcctcatctttctccgtccccacctgta
atgaacaaggttgaagctatacttggtattggtgatctgagagatcaaagagccaaatca
gctcagaaaggtaggcagagtctacgaggctttgatagtggggcactgaagagtgatttt
ggatggcctcagtttacatccaaatacatgtcaaccgatgagattgagggcattcttaga
atgcagcttgttgcaacccacagtaatgacccctacgtggatgattattaccaccaggct
tgtcttgcaagaaaatctgctggggcgaagttgagacatcatttttgtccaactcatctt
agggatcttcctccccgagcacgtgcgaatactgagcctcatgcttttctccaggttgat
gctcttgggaggcttcctttctcttcaattcgcaggcctcgccctcttcttgaagttgac
cctccaaattcatctgctgtcaccaacaatgatcagaaagcgtctgatattccgctggag
gaggaacctatgcttgctgctagagttactatagaggatggtctatgccttcttcttgat
gtagatgatattgataggtttttacagtttaatcagttgcaggatggtggagctcagatg
agacaaagacgacaggttttgttggaagggcttggtgcattgcttcagttggttgaccca
cttggcaagagtggtaacacagatgagcttgctcagaaggatgatcttgtgtttttacgg
atagtttccctccccaaaggccggaagcttcttgcacggttccttcagcttcttcctcca
ggtggtgagcttatgcgcattgtctgcatgtccattttccgtcatttaaggttcttgttc
ggaggccttccctctgatccaggagcagctgaaaccactattaaccttgcaagggttgtt
tcctcttgtgttcatagcatggatcttcgtgcacttagtgtctgtcttgcatctgtggtt
tgttcctctgagcagcccccgcttcgtccccttggaagtcctgctggagatggagcatct
tttattcttaagtctgttcttgatagggcaacaaagctcatgactgattctagagctgcg
ggcaattataatacgactaatctgtccctttggaaggcctcgtttgatgaattctttaac
cttcttaccaagtattgcataaacaaatacgacactgtgatgcagtccttgcgaatgcag
gccaaaccaaatatggcaattgatgaatcagattcagccaaagctattaaaagagaaatg
ccggttgatctcttacaggcatgtttaccccaccttaatgaccagcagaaaaagcagctt
ttggatctctctcaacggcctatgcttgtagggcagtcatga
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