Gossypium raimondii: 105787540 Help Entry 105787540         CDS       T04129                                  Name (RefSeq) vacuolar sorting protein 39   KO K20183   Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39 Organism gra  Gossypium raimondii Pathway gra04142   Lysosome biogenesis gra04148   Efferocytosis Brite KEGG Orthology (KO) [BR:gra00001]  09140 Cellular Processes   09141 Transport and catabolism    04142 Lysosome biogenesis     105787540    04148 Efferocytosis     105787540  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:gra04131]     105787540 Membrane trafficking [BR:gra04131]  Endosome - Lysosome transport   Tethering complex    Hops complex     105787540 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Vps39_1 CNH zf-Vps39_C Clathrin zf-HC5HC2H TPR_WDR35 Thiaminase_I-like_N DUF2175 Motif Other DBs NCBI-GeneID:  105787540 NCBI-ProteinID:  XP_012469430 UniProt:  A0A0D2NUW9 LinkDB All DBs Position 2:complement(997991..1004696) Genome browser AA seq 983 aa AA seqDB search MVHGAYDSFELINNCPTKIDAVESYGSKLLVGCSDGSLRIYGPDSSIADQSPPFDSLALR KKPYALERTVAWFSKKALLSMKVLESRGLLLSLSESIAFHRLPNFETIVVIAKAKGANVY SWDDRRGFLCFAKQKRVCIFRHDGRGFLEVKEFGVPDTVKSISWSGENICVGVRKDYMIL NATNGALSEVFSSGKIAPPLVVPLPSGELILGKENIGVLVDQNGKLVQAGRICWSEAPIA VVIQKPYAIALSPRRVEIRSLRVPYPLIQTIVLHDACHLIKSNNAIVVASNNSVYGLFPV PLGAQIVQLTASGEFEEALTLCKLLPPKDADLRAARERLIHTRYGHYLFENGCYEEAMEH FLASQVDITYVLSLYPSIVLPKTTTIPKPEKLMDLSPDDSSGLSDDLETLLPQPSESDEN AAFEFKKTSHNTLMALIKYLQKKGYNIVEKAAAKGMEEVVLDAIGDNFTSARSKKSNKRH GNVPINSAARDMAAILDTALLQALLLTGQPSAALELLNGLNYCDVKLCEELLQNGNHYAA LLELYKSNSMHRESLKLLHQLVEESKRNQSHAGEFGPKAIIEYLKPLCGTDPMLVLEFSL FVLENRPTQTIELFLSGNIPADMVNAYLKQHAPNMQGRYLELMLAMNENRISANLQNEMV QISLSEVLEWYSELSAQQMWDEKAYSPTRKKLLSALESISGYNPEALLEHLPPDALFEER AILFGKMNQHELALSLYVHKLHVPELALAYCDRVYDSAVHRLPVKSSGNLYLTLLQIYLN PRKTTKYFENSIMNLASSPNTSTQKVSSVASLKSKVGCKKIASIEGAEDMRIGPSNTNTT IEESSEEGGSTIMFDQVLDLLSRRWDRINGADALKILPRETKLQNLLPFLGPLVKKSSEA YRNSSVIKSLRQTENLQVKDELYNQRKATVKISRDSTCSLCDKKIGTSVFAIYPNGKTLV HFVCFRDSQNKKGVTRGSLLKQR NT seq 2952 nt NT seq  +upstreamnt  +downstreamnt atggtgcatggtgcctatgattccttcgagcttattaacaattgtcccactaaaatcgac gccgtcgaatcctacggttccaagctcctcgttggctgttccgatggttcccttcgaata tacggtcctgattcctctatcgccgaccaatctccaccgttcgattctctcgcgttacgg aaaaaaccttacgcactggagagaaccgttgcatggttttcaaagaaagctctgctttca atgaaggtattggaatccagagggctacttttgtcactctctgaatcaatcgcttttcat aggcttccgaattttgaaactattgttgtgatcgctaaagctaaaggcgctaatgtctac tcttgggacgatcgtagaggcttcctttgctttgctaagcaaaaaagagtttgcattttc aggcatgacgggcgtggattcttggaggtgaaagagtttggtgtaccagatacggtgaag tcgatatcatggtctggtgagaacatatgtgtaggtgttagaaaggactacatgatatta aatgccacaaatggcgcattgtcagaggttttctcttcggggaagatagctccgccatta gttgttcctcttccttctggggaacttattctcgggaaggaaaatattggagtccttgtg gatcaaaatggtaagcttgttcaagctggtaggatatgttggtcggaagctcctattgct gttgttatccagaagccatatgcaatagctctgtctcccaggcgtgttgagattcgctcc ctccgagttccatatcctttaatacagacgattgtcctccatgatgcttgtcatcttata aaaagtaacaatgccattgttgtagcatcaaacaattcagtttatgggcttttccctgtt cctcttggtgcacagattgtccaattaacagcatctggagaatttgaggaagcgttgact ttgtgtaagctgcttccacctaaagatgcagaccttagagccgctagggagcgtttgatt catacaagatatggtcattatctctttgaaaatggttgctatgaggaggcaatggagcac tttttggcatctcaagtggatattacttacgttctttctttgtatccatccattgttctt cccaaaacaactacaattcccaagccggagaagttgatggacctctctccggatgattca tccggcctgtctgacgatctggaaaccttgcttccacaaccatcagaatctgatgagaat gcagcattcgagttcaagaaaacgagccacaatactctcatggctcttattaagtaccta caaaagaaaggatacaacattgtagagaaagctgctgccaagggaatggaagaggtagtt ttagatgccatcggggataactttacttcagctaggtctaagaagtcaaataagcggcat ggtaacgttccaattaactcagctgctagggatatggcagctatactggatacagccctc ctccaagctctgcttcttactggacaaccatctgcagctttagaattgctgaacggtctt aactactgtgatgtaaaactatgcgaggagcttcttcaaaatgggaatcattatgctgct ctgttagaactatacaaaagtaactcaatgcaccgtgaatctcttaaactattacatcaa ttagtcgaagagtcgaaaagaaaccaatcgcacgctggggagtttggtcctaaggcaatt attgagtatctcaagcctctctgtggcaccgatccgatgcttgtgcttgagttctcgttg tttgttctcgaaaaccgtccaacacaaaccattgagctttttttgtctggaaatattcca gcagacatggtcaatgcttatttgaagcagcatgctccaaacatgcagggcaggtacttg gaacttatgctcgcgatgaatgaaaataggatctcagcgaatctgcagaatgaaatggta caaatctctctctcagaagtacttgaatggtattcagagctaagtgctcaacagatgtgg gatgagaaggcttattctccgacaagaaagaaattattgtctgcattagaaagcatctcg gggtacaatcccgaggctttgttggaacatcttcctccagatgctttattcgaagagcgt gcaattttgttcggaaaaatgaaccaacatgaacttgcgctatcactatacgttcataag cttcatgtacctgaactggcactggcctattgtgatcgggtttatgactctgcagttcat cgactcccggtaaaatcctccggcaatctatacctcactcttttacagatttatctgaat cctcggaaaacaaccaaatactttgaaaatagtattatgaatttggcatcatccccaaat acaagcacgcaaaaggttagttcagtagcttcactgaaatctaaagtaggatgtaagaaa attgcgtcaatagaaggtgcggaggatatgcgtatcggtcctagtaacaccaataccacc atcgaagaatctagtgaggaaggaggctctactatcatgttcgatcaggtacttgatctt ttgagtcgaaggtgggatagaatcaatggagctgatgcactcaaaatcttaccgagggag actaaactacagaacttgcttccatttctgggacctcttgtaaaaaagtccagtgaagca tacaggaactcctctgtcatcaagagcttgaggcagactgagaacctacaggttaaagat gaactctacaaccaaagaaaagctacggtaaagatttcgagagatagtacgtgctctctc tgcgacaagaaaatcggaacaagcgtattcgccatctacccgaatgggaaaacattggtt cactttgtttgctttagagattcacaaaataagaaaggagtaaccagaggctcattacta aagcagcgatga

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