Gossypium raimondii: 105787684
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Entry
105787684 CDS
T04129
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
gra
Gossypium raimondii
Pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105787684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gra03041
]
105787684
Spliceosome [BR:
gra03041
]
Complex B
Other components
Prp19-related factors
105787684
Complex C
105787684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_occluded
RRM_3
zf-CCCH
zf-CCCH_3
zf-CCCH_PARP12
zf-CCCH_10
zf-CCCH_4
RRM_YTH1
Motif
Other DBs
NCBI-GeneID:
105787684
NCBI-ProteinID:
XP_012469642
UniProt:
A0A0D2RFW1
LinkDB
All DBs
Position
2:2697992..2701818
Genome browser
AA seq
501 aa
AA seq
DB search
MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARYKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYVRGECTRGAECPYR
HEMPEAGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEAPEDESIKTLYVGGLDKRIT
EQDLRDNFYAHGEIESIKMVLDKACAFVTYTTREGAEKAAEELSSKLVIKGLRLKLMWGK
PQAPRPESETSDGSRQQAAVAHSGMLPRAVISQQQNQFQPSGPGMHDQPPPMQYFNIPPP
PQMDRAYYPSMDPQRMGALVPSQDGENKPGSDKQQAQHYPYQGMPPPPPGQYPHQHYPPY
GYMQPMPPYQQYPPYHSAMPPPRGPPQHYQHPGPPRPSPPVSAPASTSAQPPPASTSSGS
APPPPPPAPVPSAAASGSSQL
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggcacaccgattgttaagagatcatgaggcggatggctgggaacgctctgattttcct
atcatttgcgagtcatgccttggtgacaatccatatgtccgaatgactaaagctgattat
gataaggagtgcaagatttgtacacgtccatttacagtctttaggtggagacctggtcgt
gatgcaaggtataagaaaactgaggtttgtcagacttgcagtaagttgaaaaatgtttgt
caagtctgccttttagatcttgaatatggattgccagttcaagttcgggatactgctcta
agtataaactccaatgatgccattccaaagagtgatgtcaatagagagtatttcgccgag
gagcatgacaggagggcgagagctggtctagattatgaatcctcatatgggaaggtacgt
ccaaacgacactattctgaagcttcagagaacaacaccttactacaagagaaaccgagca
catatttgcagtttctatgtgcggggtgaatgtacaagaggtgctgagtgcccttatagg
catgagatgccagaagctggggagttgtcccagcaaaatataaaagaccgttactatggg
gtgaatgatccagtggcactaaagctacttaacaaggctggtgaaatgccttctttggaa
gcgcctgaggatgaaagcattaaaaccctttatgtgggagggctggataaaaggatcacc
gagcaagatttaagggataacttttatgcccatggtgaaattgaatcgataaagatggtc
ctcgacaaggcatgcgcctttgttacatacacaaccagagaaggagctgaaaaggctgca
gaagagctttctagcaagctagtcataaagggtcttaggctgaagctaatgtggggtaag
ccccaagccccaaggcctgagtcagaaacctccgatggatccaggcagcaagcagcagtg
gctcatagcggaatgttgccccgggcagtaatatctcagcagcagaatcaattccagcca
tctggacctggcatgcacgaccaaccaccacctatgcagtactttaatatcccacctcca
cctcagatggatagagcctactatccatcaatggaccctcaaagaatgggtgctctggtt
ccgtctcaggacggggagaacaaacccggatcagataaacaacaagcacaacactatcct
taccaaggtatgccgccgccgccacctggacaatatcctcatcaacattatccgccatat
gggtacatgcaaccaatgccaccttatcaacagtatccaccataccattcagcaatgcct
ccacctcgaggcccacctcaacattatcaacaccctggacctccaagaccttcaccacct
gtgagtgcaccagcttcaacaagcgcgcaaccaccaccagcatctacttcatcaggctct
gccccaccaccaccaccaccggcgcccgtcccatctgctgctgcatctggatcttctcag
ctatga
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