Gossypium raimondii: 105788463
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Entry
105788463 CDS
T04129
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
gra
Gossypium raimondii
Pathway
gra03030
DNA replication
gra03420
Nucleotide excision repair
gra03430
Mismatch repair
gra03440
Homologous recombination
gra03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105788463
03420 Nucleotide excision repair
105788463
03430 Mismatch repair
105788463
03440 Homologous recombination
105788463
03460 Fanconi anemia pathway
105788463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gra03000
]
105788463
03032 DNA replication proteins [BR:
gra03032
]
105788463
03400 DNA repair and recombination proteins [BR:
gra03400
]
105788463
Transcription factors [BR:
gra03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
105788463
DNA replication proteins [BR:
gra03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
105788463
DNA repair and recombination proteins [BR:
gra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
105788463
MMR (mismatch excision repair)
105788463
DSBR (double strand breaks repair)
HR (homologous recombination)
105788463
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Rhabdo_glycop_CD
SAS4
Motif
Other DBs
NCBI-GeneID:
105788463
NCBI-ProteinID:
XP_012470831
UniProt:
A0A0D2QIB0
LinkDB
All DBs
Position
2:33696976..33700350
Genome browser
AA seq
626 aa
AA seq
DB search
MAKSVSQDAISTILANPSPDSSSYIPEIVVQVLDLKLTGNRYTFNASDGKMKLRAIFPSN
MSSEIITGSVQNKGLVRILDYTLNDIPNKSEKYLIVTKCEVVSPALETEIKAEVETEEHD
TVLKKPKLEYEARYEAKADVSGIILKPKQEIVSKSAAQIVHEQRTNMAPSSRMAMTRRVH
PLVSLNPYQGNWMIKVRLTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARK
FYEKFQLGKVYYISRGTLKVANKQFKTVQNDYEMTLNENSVVEEASNEETFIPETKFNFV
PIDQLGPYVNGRELVDIIGVVQSVNPVSNIKRRIDNENIPKRDLIVADETKKTVVVSLWN
ELANNVGQELFDNADKSPIVAIKSLKVGDFQGVSLSTLGKSSVMINPDIPEAKKLRSWYD
SEGKGSSMASIGLGLSPSSKTGARSMYTDRVSLMHITSNPSLGDEKPAFFSIKAFVSLIR
PEQAMWYRACKTCNKKVTEAVGSGYWCEGCQKNDEECNLRYIMVSKISDTRGEAWVSAFN
EEAEKIVGCSADELDKLKSEQGDIDGYQQKLKEATWVPHLFKVSVTQNEYNNEKRQRITV
KAVAPINFAEESRFLLEEIKKMRNPQ
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaatctgtgagccaagatgcgatttcaacgattttggctaacccatctcccgat
tcttcttcatatatccctgaaatcgtcgttcaggtcttggatcttaagctcactggcaac
cgttacacgtttaatgcaagtgatgggaagatgaagctgagagcgatttttccatcaaac
atgtcatctgaaatcattacaggcagtgtccagaacaagggtcttgtcaggattcttgat
tataccctcaatgatatccccaacaaatctgaaaagtatttgattgtaacaaaatgcgag
gtagtatctcctgcacttgagacagaaattaaagctgaagtcgaaactgaggaacatgac
actgttttaaagaagccaaagcttgaatatgaagctagatatgaggctaaagctgacgtg
tctggtattattttgaagccaaagcaggaaattgtttcaaagtctgcggctcaaatagta
catgagcaacgaacaaacatggctccatcatcacggatggcaatgacaagaagagtgcat
cctcttgtttcattgaatccttaccagggcaattggatgattaaagttcgtctcacaagc
aagggaaacatgcgtacctataagaatgctagaggagaaggttgtgttttcaatgtggag
ttaacagatgaagatggtacacaaatacaagccacaatgtttaatgaagctgctaggaag
ttctatgagaagtttcaactggggaaggtctattacatatcaagaggaacactaaaagtt
gcaaataagcagtttaagactgttcaaaatgattatgaaatgactttgaatgagaattcc
gtggtggaagaggcttctaatgaagaaacgtttattcctgaaactaaattcaactttgtc
cctattgatcaattaggcccttatgttaatggacgggagcttgttgatattattggagtt
gttcaaagtgtcaaccctgtatcaaatattaaaaggaggattgacaatgagaatattcca
aagagggatctgattgttgcagatgaaacgaagaagacagtagtcgtttctttgtggaat
gagcttgcaaataatgttggccaggaattgtttgacaatgctgataaatctcctatagta
gcaattaaatcactcaaagtcggtgattttcaaggtgtatctttgtcaacattgggcaaa
agtagtgtgatgattaatccagatatacctgaagcaaagaagttgagatcttggtatgat
tcggaagggaaagggagttccatggcctccatcggcttaggtttgagtccttcatccaag
actggggcaagatctatgtatactgatagggtttcccttatgcatatcactagtaaccca
tctttgggtgatgaaaagcctgcatttttcagcattaaagcatttgtcagcttgatcagg
cctgagcaagcaatgtggtaccgtgcttgcaaaacatgcaacaagaaagtaactgaagct
gttggatctggctattggtgtgagggatgccagaaaaatgatgaagagtgtaatttaaga
tacataatggtctcaaagatctctgatacaagaggtgaagcctgggtttcagcctttaat
gaagaagcagagaaaattgttggatgctcagctgatgaacttgataaactcaagtcagag
caaggggatattgatggataccaacaaaagttgaaggaagcaacttgggttcctcatctt
ttcaaggtcagtgttactcaaaatgagtataacaatgagaagcggcaaaggataacagta
aaggctgtcgctccaatcaactttgctgaagaatccagatttctgcttgaagagatcaag
aagatgagaaatcctcagtag
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