Gossypium raimondii: 105788733
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Entry
105788733 CDS
T04129
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105788733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105788733
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105788733
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105788733
mRNA degradation factors
3'-5' decay
Ski complex
105788733
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
105788733
NCBI-ProteinID:
XP_012471220
LinkDB
All DBs
Position
2:39897711..39909999
Genome browser
AA seq
1345 aa
AA seq
DB search
MKPIQAANGFSFRVGFSGYSGHLRVEPLYTEERDNPIKSLPDFVLPPAFPTETPESIEEH
IKEKYLLPRLDGDAFSPEKAGKQWDFDWFARAKIPLEPSMPRAIMVPVWELPFRRCKEGS
TEGKWEPNSMQVDVSDIIIGGETRGSFPRASNGAANDIVRGSINNRPFRPGGLEDQSLER
IFPDGASNGEWVREVLNGGPAQTIPPGFKQGLKLGDLMSHPCSWNVYKDQSAPDDTSVGN
LSELSVQFDDLFKKAWEEDVAELDKDEGHSTESDSVKSEAEANQVDVLNTLDTGSSALDE
ILSVEAEKVDNGRDEGGQQQKEAWAVSGGSEWIADQFYELVPDMAIEFPFELDTFQKEAI
YYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDV
GLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEEV
IIMLPRHINIILLSATVPNTIEFADWIGRTKQKKIRVTGTTKRPVPLEHCLFYSGELYKI
CEGETFIPLGLKAAKDAYKKKNSSATSGGTGSYSGSSTVQDGARGQKREPFNRGKQNKHS
GPQNFGNYTGTGWGNQSNGGGQNSWGSRRTTWLMLIDKLSKKSLLPAVIFGFSKNQCDKS
ADSISGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVVRVQSFLCRGIGVHHAGLLPI
VKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRPVLPGEYTQMAG
RAGRRGLDKIGTVIVMCRDEIPGERDLEHVITGTPTKLESQFRLTYIMILHLLRVEELKV
EDMLKRSFAEFHSQKKLPEQQQLLLRKLAQPKKTIECIKGEPAIEEYYEMRAEAEAHSEQ
ISKAVMQTSAAQKFLTPGRVVVVKSQSAQDHLLGVVLKSSSANNKQYIVLLLKPDVPSMT
QSPSDRSNLQDKKGADFDQGYVLPPKSKRGLEEDYRISAGPRKGSGIINITLPHHGAAAG
VTFEVREAENTEFLCICNSKIKLDLPGLLEFVSNAAFSHTVQQLLKLKSNGNKYPPALDP
KDLKLKDMDLVTAYDKWTHLLQKMSQNKCHECIKLEEHIKLAKEIKKYKEEVNALQFELS
NEALLQMPEFQGRIDILKEIGYIDEDLVVQIKGRVACEMNSGEELICTECLFENQLDDLE
PEEAVALMSAFVFQQKNTSGPSLTSKLSQAKQRLYDTAIRLGDLQAEFKLPITPEEYAQE
NLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFKTAAAIMGNSSLY
KKMESASNAIKRDIVFAASLYITGV
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatccaagcagcaaacgggttcagtttccgagtcggattctccggctacagc
ggccacctcagagtcgagcctctctacaccgaggagcgtgataaccctatcaaatccctc
cccgactttgttcttccacctgcgtttccgacggaaacacctgaatcgattgaggagcac
ataaaggagaaatatcttttgccaagattagacggggatgctttctctcctgaaaaagct
ggaaagcaatgggattttgactggtttgccagggcaaaaataccattggagccatcaatg
ccaagagctataatggttccagtttgggaattaccttttagacggtgtaaggagggatca
actgaaggaaagtgggagcctaattcaatgcaggtggacgtatcagacataataattgga
ggtgaaactcgtggatcttttccacgagcgtctaatggtgcagccaatgatattgtgaga
ggaagcattaataaccgcccttttcgtccaggaggcttggaggatcaatctttagagagg
atatttcctgatggtgcatctaatggtgagtgggttcgtgaggtgctaaatggtggtcct
gctcagacaattcctccaggctttaagcaagggttaaaacttggtgatcttatgtcacat
ccttgctcatggaatgtttacaaggaccaaagtgcacctgatgacacatcagttggaaat
ttgagtgagttgtctgtacaatttgatgacttgttcaagaaagcttgggaagaggatgtt
gcagaacttgacaaagatgaagggcattcaacagaatcagattctgttaagtcagaagct
gaagcaaaccaagttgatgttctcaacactcttgatactggatcatctgctttggatgag
attttgtcagttgaagctgaaaaagtagataatggcagggatgagggtggtcagcaacaa
aaggaggcttgggctgttagtggaggtagtgagtggattgctgatcagttttatgaacta
gttcctgacatggcaattgagtttccttttgagttggatacattccagaaggaggctatt
tattatctggaaaagggggaatctgtttttgtggcggcacatacatctgctggaaagaca
gttgtagcagaatatgcatttgctttggcatcaaaacattgcactagagctgtgtatact
gctccaattaaaacaatcagcaaccagaagtatagagatttctgtgggaagtttgatgtt
ggccttctcacaggtgatgttagtttgagaccagaggcttcttgtctcatcatgacaact
gaaatattaaggtcaatgctttatcgaggtgcagatattattcgcgatattgaatgggtt
atatttgatgaggtgcactatgtgaatgatgttgaaagaggagtggtttgggaagaagtc
ataatcatgcttccaaggcatattaatatcatccttctttcagccacggtgcctaataca
attgagtttgctgattggattggtcggacaaagcaaaagaaaattcgtgtcactggaaca
acaaaaagaccagtcccactggagcattgcctgttttattccggagaactttacaaaata
tgtgagggagaaacttttatacctctgggactaaaggctgctaaagatgcttacaagaaa
aagaattccagtgcaactagtggtgggactggttcatatagtggatcttctacagttcag
gatggggctagaggtcagaaacgtgaaccttttaaccgagggaaacaaaataagcattct
ggtccccaaaattttgggaattatactggaactggttgggggaatcaaagtaatggaggt
ggccagaatagttggggctctaggagaacaacttggttgatgcttattgacaagctttca
aagaagtcactattacctgcggttatatttggtttctcaaagaatcaatgtgataaatct
gctgacagcatctcaggaactgacctcactagtagttctgagaaaagtgagattcgagta
ttttgtgataaagctttttcacggctgaagggatctgatcgtaacttgcctcaggttgtc
agagttcagagctttctttgcaggggaattggcgtacatcatgcaggtttgcttccaatt
gttaaggaagttgttgagatgctcttctgtcgaggtgtgattaaggttttgttttcaaca
gagacatttgcaatgggggttaatgctccagccagaacggttgtatttgatacattaagg
aagtttgatggcaaggaatttagaccggtgcttcctggggaatacactcaaatggcaggt
cgtgctggcagaagaggacttgataaaattggtacagttattgtgatgtgtcgtgatgaa
atccctggagagcgtgatttggaacatgttataactggaactccaactaagcttgaatct
caattccgattgacatacatcatgatcctgcatctccttcgtgtcgaagaactgaaggta
gaggacatgttgaaacgaagttttgctgaatttcattctcagaagaaacttccagagcaa
cagcaactactattgcggaagcttgcacagccaaagaaaactatagaatgtattaaaggt
gaaccagcaattgaagagtactatgagatgcgtgctgaagctgaggcacacagtgaacag
atatcaaaagctgtcatgcagacttctgcagcacaaaaatttcttaccccagggagagtg
gttgtggtcaaatctcagtcagcgcaggaccatttactaggagttgtcctgaaatcatct
tctgccaataacaaacaatatattgtgctacttcttaaacctgatgtgccatcaatgact
caaagtccctcagacagaagtaacttgcaagacaagaaaggtgccgacttcgatcaaggt
tatgtgctgccaccaaaatccaagcgtggtcttgaagaagattaccgcatatctgctggt
ccacgtaaagggtcaggtatcatcaacataacactgccacaccatggtgctgctgcagga
gtgacttttgaggtcagagaagctgaaaatacagaattcttatgtatatgcaatagcaag
ataaaattggacctacctggacttcttgaatttgttagcaatgcagctttctcccacaca
gttcagcagctcttgaaattgaagtctaatggaaacaaatatcctcctgccttagatcca
aaagatctaaaattgaaagacatggatctcgttacagcatacgacaaatggacccatcta
ctgcagaaaatgtcacagaacaaatgccatgaatgtataaagttggaggagcatattaag
ttagccaaagaaattaagaagtataaagaggaagttaatgctcttcaatttgaactatct
aacgaagcactcctacagatgccagaatttcagggccggattgatattctgaaagaaatt
ggttatatagatgaagaccttgtggttcaaataaaaggtcgtgttgcctgtgagatgaat
tcaggggaggaattgatatgcacagaatgtttatttgagaatcaactcgatgaccttgaa
cccgaagaggcagtggctttaatgtctgccttcgtgtttcagcaaaagaacacttccgga
ccttctcttacttccaaactctctcaggccaaacaaaggttgtatgacacagctataaga
cttggtgaccttcaagcagagttcaaattaccaataacgcccgaggagtatgcacaagaa
aatctcaagttcggtctcgttgaagtggtttacgaatgggcaaagggaaccccgtttgca
gatatttgtgagctcacggatgttcctgaaggccttatagtgcgaacaattgtcaggctg
gatgagacctgtcgcgaattcaaaactgccgcagctataatgggtaattcatcgctttac
aagaaaatggaatctgcttccaatgccataaaacgtgatatcgtttttgcggctagtttg
tacattactggagtgtga
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integrated database retrieval system
