Gossypium raimondii: 105788791
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Entry
105788791 CDS
T04129
Name
(RefSeq) E3 ubiquitin-protein ligase RDUF1
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gra04131
]
105788791
04121 Ubiquitin system [BR:
gra04121
]
105788791
Enzymes [BR:
gra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105788791
Membrane trafficking [BR:
gra04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
105788791
Ubiquitin system [BR:
gra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105788791
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1117
Zn_ribbon_19
zf-RING_2
zf-C3HC4_2
zf-rbx1
zf-RING_11
zf-C3HC4
zf-RING_UBOX
zf-RING_5
zf-ANAPC11
zf-C3H2C3
zf-RING-like
Rad50_zn_hook
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
105788791
NCBI-ProteinID:
XP_012471288
UniProt:
A0A0D2QSS3
LinkDB
All DBs
Position
2:40804575..40810815
Genome browser
AA seq
494 aa
AA seq
DB search
MSDRSEHANHDEANSRVQTSEHGTSSSIPIPLAQEQELKNIFFECLNQWFNEFMQERNPA
QQPPPSTVPPVEPPIAPSPPLVTESSNVIRRPRFPLKATEAHFCTENPFFFFLNLPLFLD
LESSPGSSMSSTSSYWCYSCTRLVRVVVLDSGSNDAVVCPYCDGGFIEEIESSDNHNRRF
PAMYMITSNDNSRQNSNRARNLVFRRNRRGSVDRSNINPIIVLRGSTDDENGSTNGNSNI
NSGFGFFYDDGSGSGLRPIPTSMSESLMGLGFDRLLEQLSQIELTGLGQPENPPASKSAI
ESMPTIQIEKAHVCSETHCAVCKEPFELGSEAKEMPCKHIYHEDCIIPWLALRNSCPLCR
HELPSDRSESNDEASETVGLSIWRLPGGVFAVGRFRGEREVPVVYTEMDGGFGESGSESG
SGHGAARRVSWVGVRRRENGFRRVVRNVTSFLRGLRSQPSHRGNEESGGLTRSGSTSMFR
RFTRSLSSSSSSVL
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatagatctgaacatgctaatcatgatgaagctaatagtagagtacaaacatct
gaacatgggacaagtagtagcatcccaattcctctagctcaagaacaagaacttaaaaat
atattcttcgaatgtttgaatcaatggtttaatgaattcatgcaagagagaaatccagct
caacaacctcctccctctactgtaccacctgtagagccaccaattgcaccttcacctcct
ctagtgactgaatccagcaatgtaatccggcggcctcgtttccctttaaaagcgactgaa
gctcatttctgcaccgaaaatcctttttttttttttttaaatttgcctttatttctggat
ctggaatcctcgccggggtcaagcatgtcttcaacgtcttcgtattggtgttacagctgc
acccgtctggttcgggtggtggttttggatagcgggtcaaacgacgccgttgtctgcccg
tactgcgacggaggcttcatcgaggagatcgaatcttcggataatcacaaccgtcggttt
ccagctatgtacatgatcaccagcaacgataatagccgtcaaaattcgaatcgggcgcga
aatctcgtctttcgtaggaatcgtcgtggttctgttgaccggtcaaacatcaatccgatc
atcgtcctccgtggctccaccgacgacgagaacggctccaccaacgggaacagcaacatc
aacagcgggtttgggttcttctatgatgacggatctgggtccggtttaagacccataccg
acttcgatgtccgaatctctaatgggtttgggtttcgatcggttattggaacaactttcc
cagatcgaactaaccggactgggtcaacccgagaacccgccggcttcgaaatcggcaatc
gaatcaatgccgacgattcaaatagaaaaggcccatgtttgttcggaaacccactgcgcc
gtttgtaaagaacctttcgagctcgggtcggaagcgaaggagatgccgtgcaagcatatt
taccatgaagattgtatcatcccatggctggcgcttcgaaactcgtgcccactttgccgt
cacgaattgccgtcggatcggagcgagtcgaacgacgaggcatcagagacggtggggctg
agcatatggaggttaccgggtggggttttcgcggtgggaaggttcaggggagaaagggaa
gtgccggtagtatacacggagatggacggtgggtttggggaatcgggatcggagtcgggt
tcgggtcatggagcagcgaggagggtatcgtgggtcggggtaagaagaagagagaatggg
ttcaggagagttgttagaaatgtgacgtcgtttttgagggggttgaggtctcagccgtct
caccgtggaaatgaagaatccggtggtttgaccagaagtggttcaacgtctatgtttcgt
aggtttacaagaagcttaagctcaagctccagctccgttttgtaa
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