Gossypium raimondii: 105788839
Help
Entry
105788839 CDS
T04129
Name
(RefSeq) U-box domain-containing protein 13 isoform X1
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
gra
Gossypium raimondii
Pathway
gra04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
105788839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gra04121
]
105788839
Enzymes [BR:
gra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105788839
Ubiquitin system [BR:
gra04121
]
Ubiquitin ligases (E3)
U-box type E3
105788839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
U-box
ARM_ARMC5
zf-RING_UBOX
HEAT_2
MLKL_N
zf-Nse
zf-C3HC4_4
HEAT_EZ
Arm_2
zf-C3HC4_2
KAP
zf-C3HC4
DUF6746
zf-RING_2
zf-rbx1
MCAfunc
Motif
Other DBs
NCBI-GeneID:
105788839
NCBI-ProteinID:
XP_012471352
UniProt:
A0A0D2RM03
LinkDB
All DBs
Position
2:41587679..41592098
Genome browser
AA seq
660 aa
AA seq
DB search
MEEEKGALVQGLIEAVNQIASIGDYSCAVKKEYCNLARRLKLLTPMFEEIREIKEQIPEE
TVKALVSLKEALVSAKELLIFGSEGSKIYLVLERKQIMHKFHEVTARLEQALSRISHENL
DILEEVKEQVELVLAQFRRAKGRVDVPDVELYEDLLSLYNKNNDAAADPEVLRRLAEKLQ
LVGIAELMQESLALHEMVSASGGDPGAIFEKMSNLLKEIKDFVQTENPNLDAPAREKNLP
PSSSSAQTTAVGNHKAPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEQGHRTC
PKTQQTLSNPALTPNYVLRSLIAQWCETNGIDPPKRPSSSQPSKTKFACSPAELAKIQIL
LCKLSSSNPEDQRTAAGEIRLLAKRNADNRVAIAEAGAIPLLVKILSTPDSRTQEHAVTA
LLNLSICEDNKGSIISSGAVPGIVQVLKKGSMEARENAAATLFSLSVVDENKVAIGASGA
IPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKTVRAGVIPTLMRLLTEPGGGMVDEA
LAILAILASHPEAKFAIGAAKAMPVLVDFIGNGLPRNKENAAAVLVHLCAGDQQHLADAE
ELGVMGHLVDLAQNGTDRGKRKAAQLLQRLSRFVEQQKRSQSQAEAQAEQSLSQSRAQQP
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagagaaaggagccctggtgcagggcttgatcgaagcggtgaaccaaatagct
tcgatcggcgactacagttgcgccgtgaagaaggagtattgcaacctcgctaggagactg
aagctgttgacgccaatgttcgaggagattagagaaatcaaagagcaaatccctgaagaa
acggttaaagctttggtatcgttgaaagaagctctggtttcggctaaggagttgcttata
ttcggaagtgaaggcagcaagatttacctggttctagagaggaagcagattatgcataaa
tttcatgaagtgacagctcgattggagcaggctttgagtagaatttcccatgagaatctt
gacatcctagaagaagttaaggaacaggttgagcttgttctagctcagttcaggagagct
aaagggagggttgatgtacctgatgttgagctgtatgaggatctattgtcactctacaac
aagaacaatgatgcagcagcagatccagaggtactaaggagattggctgagaagttacag
ttggtgggaatagctgaacttatgcaagaatctctagctctacatgagatggtttctgcc
agtggtggagatcccggggcaatatttgagaagatgtcaaacttattgaaggaaatcaag
gattttgtacagacggaaaatcctaacttggatgctcctgcaagagaaaagaatcttcct
cctagtagcagcagtgcgcaaacaaccgctgttggaaatcacaaggccccagttatacca
gatgatttccgctgtccaatatcccttgagctgatgaaagatcccgtcattgtttcaaca
gggcagacttatgaacgatcttgcattgagaaatggctggagcaagggcatcgaacatgt
ccgaagacacaacagactcttagtaaccctgctcttactcccaattatgtattgcgtagt
ttaatagctcaatggtgcgagacaaatggcattgacccacccaaaaggccgagtagttct
cagcccagtaaaaccaaatttgcctgctcacctgctgaacttgccaagattcaaattctc
ctctgtaagctctcatccagcaatcctgaagaccaaagaacggctgcaggtgaaatccgt
ctccttgctaaacgcaatgcagataaccgtgtagccattgctgaagcgggggctatacct
ctccttgtaaaaatcctttcaacacctgactcacgcacccaagaacatgctgtaacagca
cttcttaacctttctatttgtgaagataacaaaggaagtatcatatcctccggtgcagtt
cctggtattgtccaggtgcttaagaaggggagcatggaagctagggaaaatgcagcagct
accctcttcagcctttcggtagtggatgaaaataaggtggcaattggcgcctcgggagca
atccctccactagtgacactgctaagtgaaggcacacaaaggggcaaaaaggatgcagca
acagcactcttcaacttgtgcatttaccaagggaacaaaggaaaaactgtgagagctgga
gttatacctacgttaatgcgtttgctgacagaacctggaggcggaatggtggatgaggca
ttggccatacttgcaattcttgctagccatcctgaagcaaagtttgccattggagcagca
aaggctatgccagttttggtagattttattggaaatggattgccgaggaacaaagagaat
gcggctgctgttttggtgcacctttgtgccggagaccaacagcatctagcagatgccgag
gaactaggcgtgatgggtcatttggtggacttggcacaaaatggtacggataggggcaag
cggaaagctgctcaactgctccagcgcttaagcagatttgttgagcagcaaaagcggtca
cagtcccaagctgaggcccaagcagagcagtccctatctcagtctcgtgctcagcagcca
tga
DBGET
integrated database retrieval system
