Gossypium raimondii: 105789562
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Entry
105789562 CDS
T04129
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105789562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105789562
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105789562
mRNA degradation factors
5'-3' decay
Decapping complex
105789562
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
105789562
NCBI-ProteinID:
XP_052489307
LinkDB
All DBs
Position
7:complement(43167733..43174113)
Genome browser
AA seq
810 aa
AA seq
DB search
MERSDGKLPSSFSQASSDNALFDASQYEFFGQNAVAEVDLGGLEDGEEDSPVFASTEDDE
YHLFDRGELVGLGSLSDMDDLASTFAKLNRVVTGPRNPGVIGDRSGSFSRESSSAADWSQ
DGDYLNWMDQHMFDVEDVQEGKGWSSQPLLSTAPPVLEPKPLYRTSTYPQQQPQPHHFSS
EPIVGSKSTFTSFPPPGNRCEQSLPTHLKIPALTSGSQSPFSPLSNSSLRLAGLSHGLHY
GGNMSQLTSPGLSFSSRSQNHWVNNSGLLHGDHAGLLHHMLQHQIPHQNGLISPQLMSPQ
QHRLHHSIQPSLAHLTALQSQLYNPHPSSHKMMFGTADHREQRTKSSRNRQSMRFSQQSS
DTSSQKNESGLVQFRSKHMTAEEIESILKMQHAATHSNDPYVDDYYHQACLAKRSSGSRA
KHLFCPSHLKESHSRSRNSSGEQHLHVHVDALGKVPVPTIRKPRPLLEIDPPLVDGGSEQ
KTEKPLEQEPMLAARITVEDSLGLLFDVDDIDRLLLSSQPQDGGAQLRRRRQILLESLAQ
SLQLVDPLSKGRHAVTCTPKDDIVFLRIVSLPKGRKLITRYLKLLIPGSELIRIVCMAIF
RHLRFLFGGLSSDPEAAETTTNLAKTVSLSINNMDIRSLSACLVAVVCSTEQPPFRPLGS
PAGDGASVILKSVLERATQVLTHPSGNFPMPHYTFWRASFDEFFTLLTKYCVTKYESIIQ
SIHNQSLPTTEVIGSEAIRREMPCELLRASLPHTNEAQRKLLMDFSQRSVPDNGSNSPAG
SNSQINSESEFQGGSIQEWQWQRGELVVSE
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggagagatccgatggtaaacttcccagcagcttctctcaagcttcctcagataatgct
ctttttgatgcatcccagtacgaattttttggtcaaaatgctgtggcagaagtggacttg
gggggtttagaagatggtgaagaggattctcctgtgtttgcatccactgaagatgatgag
taccatttgtttgatagaggagagcttgtaggtttaggatcattgtctgacatggatgat
ctggctagtacttttgcaaagttgaatagggttgttacaggaccaagaaatccaggagtt
attggtgatcgatcgggatctttttcaagggaaagttcatctgctgctgattggtctcaa
gatggagactacctaaattggatggatcagcatatgttcgatgtagaagatgttcaagaa
ggcaagggatggtcctcgcaaccacttctttctacagctcctcctgtcctggaaccaaaa
cctttgtatagaacttctacatatccccagcagcaaccacagccacatcacttttcaagt
gaaccgatcgttggatctaaatcaaccttcacatctttcccacctcctggtaacagatgc
gagcagtctttacctactcacctaaaaatcccagctcttaccagtggatctcagtccccc
ttctctccattgtctaactctagtctccgtttggctggtttatctcatggattgcattat
ggtggtaatatgtctcagttaacatctccgggcctatcttttagtagcagatcgcaaaat
cattgggtaaacaattccggtttattacatggagatcatgctggtcttttgcatcatatg
ttgcaacatcaaatacctcatcaaaatggcttgatatccccacagttaatgtcaccgcaa
caacacaggctgcaccattcgattcaaccgtctttggcacatttgaccgcgttacaatct
cagctgtataatcctcatccttcttcgcataaaatgatgtttggaacggctgatcatagg
gaacaacggacgaaatcatcaagaaacaggcagagcatgcggttttctcagcaaagttct
gataccagtagccagaaaaacgagagtgggttggtacaattccggtccaagcatatgact
gctgaagaaatagagagtattcttaagatgcaacatgctgcgacacatagtaacgatcct
tacgtagatgattattaccaccaagcttgtcttgccaaaagatcatcgggatccagggct
aaacatcttttttgcccgtctcacttgaaggaatcacattctcgatctcgtaacagtagt
ggagagcagcatttgcatgttcatgttgatgcacttgggaaagtccccgtccctaccatt
cgtaaacctcgtcctttgcttgaaattgatcctccattagttgatgggggctctgaacag
aaaaccgagaagcctctagaacaggaaccgatgcttgcagctaggatcaccgttgaagat
tctcttggccttcttttcgatgttgatgatattgacaggctcttactgtctagtcagccc
caagacggtggagctcaacttagacggaggcggcagatcctgcttgaaagtctagcacaa
tcgcttcagctcgttgatcctcttagcaaaggcagacatgcggttacctgtactcccaaa
gatgacattgtgttcctaaggatcgtttctcttccgaagggtcgtaaactcatcaccagg
taccttaaacttctcatccctggaagtgagcttattcgaatagtatgcatggccattttc
cgtcacttgagattcttgtttggcggtctttcttccgatcccgaagcagctgaaacaact
accaaccttgcaaagaccgtttccctatctatcaacaacatggatatccgttcgcttagt
gcttgccttgttgctgttgtttgttctacagaacaaccaccgttcagacccctcggaagc
cctgccggtgatggtgcttcagttattctaaaatccgttctcgaaagagccactcaagtc
ttaactcatccatccggaaatttcccaatgcctcattacacattctggagagcatcgttt
gatgaattcttcactctcctcaccaaatactgtgtcaccaaatacgagtcgataatacaa
tcgatacacaaccagtctctaccaaccacagaagtaattggttcagaagctataagacgt
gaaatgccttgcgagctcttacgtgctagtctccctcacaccaatgaagctcaaagaaag
cttttaatggacttctcgcaacgttctgtcccggataacggatccaactcgcctgccgga
agtaatagccaaataaactctgaatcagaatttcaaggagggagtatccaagaatggcaa
tggcaaaggggggaattagtggtgagtgaatga
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