Gossypium raimondii: 105790043
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Entry
105790043 CDS
T04129
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
gra
Gossypium raimondii
Pathway
gra04120
Ubiquitin mediated proteolysis
gra04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
105790043
04120 Ubiquitin mediated proteolysis
105790043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gra04121
]
105790043
Enzymes [BR:
gra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105790043
Ubiquitin system [BR:
gra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105790043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_11
zf-RING_5
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
105790043
NCBI-ProteinID:
XP_012472886
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All DBs
Position
8:854785..860829
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AA seq
547 aa
AA seq
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MMRLQTYAGLSLVAMLAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQI
TKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLA
QKRVEYIETTPSVPMLSHIRIVSFLGFLLLLDCLFLSSSIKFLIQTRQASVSLFFAFEYM
ILATTIVSNFIKYVFYVSDMLMEGQWEKKAVYTFYLELIRDLLHLSMYLCFFLVIFMNYG
VPLHLIRELYETFRNFKIRVADYMRYRKIASNMNDRFPDATAEELAANDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTSSSGGQHGPWSDAQGQGSGT
SSARQGFGGDMAADNLTQHQARLQAAATAASIYEKSYVYPSANTLVWSPGYAVLPKAYGQ
PDDSTKGESSGETTSTGEQFVIPGGQVNLSFPWFPHCAFVPFQLPRVNGNMGEASSSNLH
IPDSQLEAQKKIIQQQIEVSFMCHKVLQNQLQLLQMQKPKTEGSADAGPTALSDRKGKTI
SSSSSGD
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgcaaacctatgctggtctcagtttagtcgcgatgctagctgttatttac
catgcattcaacagtagaggccagttttatcctgctatggtgtatttatcaacctctaag
atcagcttggtgctgcttctcaacatggggcttgtatttatgtgcatcttatggcaaata
accaaaaagatattccttgggtcccttcgtgaagctgaggttgaacggttgaatgagcag
tcgtggagagaggttatggagatcctctttgcgatcactattttccgtcaggacttttca
gttacgtttcttgctatggttactgctctgttgttaatcaaggctttgcactggttggca
cagaaaagggttgagtacattgagacgaccccttctgttcctatgttgtctcacattcgg
attgtttcttttctgggtttccttcttcttctagattgtctgtttttgtcaagttctatc
aagtttctgatccaaacacggcaagcttcagtttccctattctttgcgtttgagtacatg
attctggctaccacaatagtgtcaaattttataaaatatgttttctatgtgagtgacatg
cttatggaaggacaatgggagaagaaggctgtctataccttctacttggagctcattcgg
gacttgcttcacttgtctatgtatttatgcttctttcttgtgattttcatgaactatggt
gtacctctgcacttaatacgggagctctatgaaacctttaggaatttcaaaattcgtgtt
gctgattacatgcgttataggaagattgcttcaaatatgaatgacagattcccagatgca
accgctgaagagctcgctgcaaacgatgcaacatgtattatatgccgcgaagagatgacc
acagcaaagaagttgatatgtggacatctttttcatgtgcactgtcttcgatcatggctg
gagagacagcatacctgccctacatgtagagctctcgttgtaccacctgaaaacggaaca
agttcatctggagggcaacatggaccttggtcagatgctcaaggacaagggtctggcaca
agctcagctcgacaaggttttggtggtgacatggctgctgataatttgacccagcatcag
gccaggcttcaggctgctgccactgcagcatcaatatatgagaaatcctacgtctatcca
tctgcaaacactctagtttggtctcctggatatgctgtacttcccaaggcttatgggcaa
ccagatgactccacgaagggtgaatctagtggggaaacgacatccaccggagaacaattt
gtcattcctggtggacaagtcaacttgtcctttccatggttcccacattgtgcttttgtt
cctttccaattgcctcgtgttaatggaaacatgggagaggcatcgagtagtaatctgcac
attccagattctcagttggaagctcagaagaagatcattcagcagcagattgaggtatca
tttatgtgtcataaggtgctacaaaatcagctccaactcctgcagatgcagaagccgaaa
actgaaggaagtgcggacgctggtcccacagccttgtcggacagaaaagggaagacaatt
tcttcttcttcttcaggagattga
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