Gossypium raimondii: 105790253
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Entry
105790253 CDS
T04129
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105790253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105790253
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105790253
mRNA degradation factors
5'-3' decay
Decapping complex
105790253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
105790253
NCBI-ProteinID:
XP_012473205
UniProt:
A0A0D2MSZ9
LinkDB
All DBs
Position
8:2778565..2785205
Genome browser
AA seq
1354 aa
AA seq
DB search
MASTGNPNQTIPFDVQKFFKPTVSNPSNSNFQQQNLSSSPYPTPSPYPSPSPPFFHPQYH
QFYMPPSSPTHANYQDSKSLSFPSPPLSPYNAGTQILALINSSPQNPDFPPQNQPPKLQQ
PPHVEFLGSGGPNVGPSRVPSCKLPKGRRLSGTQVGYDIDTRLSGEVQPQLEVTPITKYG
SDPQLVLGRQIAVNKSYICYGLKGGSIRILNLNTALRSLFRGHTQRITDMAFFAEDVHLL
ASVSLEGRIFVWKVSEGPDEEEKPQITGKIVIAVQILGDEEYVNPRICWHRHKQEVLVAG
IGKHILRVDTMKVGKNEVFSTDAPSPLQCPIDKLIDGIQLVGKHDGEVTDVSMCQWMITR
LVSASTDGTIKIWDDRKSVPLTVLRPHDGQPVYSATFLTAPHRPDHIILITGGPLNQEIK
VWTSASEEGWLLPSNTEKWTCTQTLELKSSAEPQMEEAFFNQVVALSQAGLLLLANAKRN
AIYAVHLEYGSCPSASRMDYMAEFTVTMPILSFTGTSDPPDEHIVKIYCVQTQAIQQYAL
ELCQCIPPPLENIGLEKSDSSISRDAINTEGFDTFNPSGNKPSDLPLYTSVPKPSARVSS
SENLTAARYPSSPHSIEANTAQELNTSNIDPKPASSALASTASDADIVCVASPPTVPPSP
RLSRKPSGFHNYEDYPVDRQMDTVRSNLSGLHSSEDGSRNDDKKMVSDDKSSAYTPPIIF
KHPTHLVTPSEILMAATSSETTNVNEGKSEGEVHIQDVVVNNDARNAELEVKVVGEARSS
QNNEFGSHGDSQNRNLENREKFFCSQASDLGIQMSRESSAISRDAYVVDESRQADGVGAS
GSHVKPNIAEEEINDSRKDLSGKGLESAIPSTYQQSPTSGAKGKKHKGKGSQASAHTSPS
SSAFNSADSTTEPGANSNLPSAAAAFPQIAAMQDMLNQLITTQKEMQKQMSSIVNQPVTK
EGRRLEAALGRSIEKALKANTDALWARFQEENAKNEKLLREHTHQITSLITNFMNKDLAV
MLDKVVKKELAGVGPAVIRTITPAIEKTVTSVINESFQRGVGDKAVNQLEKSVNSKLEAI
VARQIQAQFQTSGKQALQEALRTSVEALVVPAFEISCKALFEQVDSAFQKGMVEHTNAAQ
QQLESASSSLAITLRDAINSASSIAKTLSGEFAEGQRKLLAIAAAGANSNAATSFSSQLS
NGPLGGLHDKVVVPMDPTKELSKLLSEGKYEEAFTIALQRSDLSIVSWLCSQVDLRTILS
TAPFPLSQGVLLSLLQQLACDINKDTPRKLTWMVDVATAINPGDQMIAVHVRPIFQEVYK
RVHEISSSPLLTGADHASIRALIYVINYVLMTCK
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaacggggaacccaaatcaaaccatcccatttgatgtgcaaaaattcttcaaa
cccacagtttctaacccatcaaattccaactttcaacaacaaaatctatcttcttcgcca
tatcctacaccttctccttacccttcaccttctccacctttctttcacccacagtatcac
caattctacatgcctccttcttctcctacccatgctaattaccaagattccaaatccctt
tctttcccttcaccccctcttagcccttacaatgctggcacccaaattcttgcccttatt
aactcttcccctcaaaaccctgatttcccacctcaaaatcaaccccctaaactgcagcaa
ccgcctcacgttgagtttttgggttctgggggtcccaatgtagggccttcgagggtgccg
agttgtaaattgcctaaaggaaggcggttatcaggcactcaggtgggttatgatattgac
acgaggctgtccggggaggttcagcctcagctcgaagttactcccataaccaagtatggg
tctgatcctcagctggtacttggaaggcagattgctgttaataagtcttacatttgttat
gggttgaaaggaggcagtattaggattcttaatttaaacactgcattgaggtctttgttt
cgtgggcacacgcagaggatcacagacatggccttctttgcggaggatgttcatcttttg
gctagtgtgagtctagagggaaggatatttgtttggaaggtatctgaaggtccagatgaa
gaagagaaaccgcagattacagggaagatagttattgctgttcagatattaggcgatgaa
gaatatgtaaatccacgtatttgttggcaccggcacaaacaagaagttttggtggctggg
attggaaaacacattctgagagttgataccatgaaagttgggaagaatgaagtcttctca
actgatgcaccttcacctctccaatgtcctatagacaagttgattgatgggattcagttg
gttggtaaacatgatggagaagttactgatgtttcaatgtgtcagtggatgattacccgt
ttagtgtctgcttctacagatggcacgataaagatatgggatgaccgcaagtcagtgcca
ctaacagtgttgagaccacatgacggccaacctgtttattcagctacattcttaactgct
cctcaccgaccagatcatattatactcataacaggggggcccctaaatcaagaaatcaaa
gtttggacatcagcaagtgaagagggttggcttcttccaagcaatactgaaaaatggact
tgcacccagacattggagttgaaaagttctgctgaacctcaaatggaagaagcattcttc
aatcaagttgttgcattatcgcaagctggccttctcttacttgcaaatgctaaaagaaat
gctatttacgctgtacacttagaatatggttcttgtccatctgcatcacgcatggattac
atggcagagttcactgtcactatgcccatattaagttttactgggacaagtgatcctcct
gatgaacatattgttaaaatatattgtgtacagacacaggctatccagcagtatgctttg
gagttatgccagtgcatcccaccaccactggaaaatattggcttggagaagtcagattca
agcatttctcgtgacgctattaacaccgaaggctttgatactttcaatccatctggaaat
aaaccttctgacttgcccctttatacttcagttcccaaaccaagtgcacgagtaagtagc
tctgaaaatttaactgcagcgaggtatccttcaagcccccattctattgaggcaaatact
gcacaagagctaaacacttcgaatattgatcccaagcctgcttcttctgctttggcttca
acggcaagtgatgctgatattgtatgtgttgcatcaccaccaacagttcctcctagtcct
aggttatctaggaaaccctctggttttcataactatgaggattatccagttgacagacaa
atggacactgttcgatcgaatttgtctggtctgcattcatcagaagatggttcaaggaat
gatgacaagaaaatggtatcagatgacaaatctagtgcatatactccgcctatcattttc
aagcatccaactcatcttgtgaccccatctgagatattgatggctgcaacatcttctgaa
actactaatgtcaatgagggaaagagtgagggcgaggtgcacattcaggatgtggttgtc
aataatgatgcacgcaatgctgagttggaggtaaaagtggtgggtgaagcaagatcatct
cagaacaatgaatttggttcccatggagactcccaaaatcgaaatttggaaaatagagag
aaattcttttgctcccaggcttcagatcttggtattcagatgtcgagggagagcagtgcg
atatccagggatgcttacgttgttgatgaatctcggcaagcggatggtgttggtgcatca
gggtcgcatgtgaagcctaatattgctgaggaagaaatcaatgattccagaaaggatctt
tctggaaagggtttggaatcagccataccttctacatatcaacaatcaccaacatcaggt
gcaaaagggaagaagcataaagggaaaggttctcaggcatctgctcacacttccccttct
tcaagtgctttcaattctgcagattctaccactgaaccaggagcaaattccaatctcccc
tcagctgctgctgcatttcctcaaatagcggctatgcaagatatgcttaatcagctaatt
actacacaaaaggaaatgcagaaacaaatgtcaagtattgtcaaccaaccagttacaaaa
gaaggaagaagactagaggctgctctaggacggagtattgaaaaagctcttaaggccaat
actgatgctctatgggctcgttttcaggaagaaaatgcaaaaaatgagaagctgcttcga
gaacatacacaccagataactagcttgatcactaattttatgaacaaggatttggcagta
atgttggacaaagtagtcaagaaggaattagctggagttggaccagctgttattcgtacc
attactccagcaatagagaaaaccgtaacttcagtaatcaatgagtccttccagagaggg
gtcggagataaagcagtgaatcaactagagaagtctgttaattcgaaactcgaagctata
gttgccaggcaaattcaagcccagtttcaaacttctggcaagcaagcactccaggaggct
ttgaggactagtgtggaagctctagtggtccctgcttttgagatttcatgcaaagccctg
tttgagcaagtagattctgcgtttcagaaagggatggttgagcataccaatgctgctcag
caacagttagagtctgcaagttcttctttggcaattactttaagggatgccataaactcc
gcttcatcaattgctaaaaccttaagtggggaatttgctgaagggcaacggaaactttta
gcaattgcagctgctggagctaactcaaatgctgcaacttcattttcttcccaacttagc
aatggacctttaggtggtcttcatgacaaggttgttgtgcccatggatcccacaaaagag
ctatcaaagttgttatctgaaggcaaatacgaagaagcgttcacaattgcgctgcaaagg
agtgacctctctattgtttcttggttatgttcacaggttgatctacgtacgattctgtca
actgcaccttttcctttgagccaaggagtgctgctctccctcttgcagcagttggcatgc
gacatcaacaaggacactccacgaaaactcacatggatggtggacgtggccacagctatc
aacccaggtgaccaaatgattgcggtgcatgtgcgaccaatctttcaggaagtctacaag
agagtgcatgaaataagtagctcgccattgcttacaggtgcagaccatgcgagtatccgt
gctctcatttatgtcatcaactatgttttaatgacttgtaaatga
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integrated database retrieval system
