Gossypium raimondii: 105790282
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Entry
105790282 CDS
T04129
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105790282
09123 Folding, sorting and degradation
03018 RNA degradation
105790282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105790282
03041 Spliceosome [BR:
gra03041
]
105790282
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105790282
mRNA degradation factors
5'-3' decay
Lsm complex
105790282
Spliceosome [BR:
gra03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
105790282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
105790282
NCBI-ProteinID:
XP_012473248
UniProt:
A0A0D2P698
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Position
8:2961562..2964622
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDQDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcaggaaggaaacagtgttggatttggctaagtttgttgacaaaggtgttcag
gtcaaactcaccggtggtagacaagtcacggggaccctaaaaggatacgaccagctactg
aatcttgtcctggatgaagctgtagagtttcttcgagaccaggatgatccgttgaagact
actgatcagactaggcgtcttggcttgatagtttgtaggggcacagcagtcatgctggtg
tcacctactgatggcacagatgagattgccaatcctttcatccagccagatggagcctga
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