Gossypium raimondii: 105790298
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Entry
105790298 CDS
T04129
Name
(RefSeq) LOW QUALITY PROTEIN: polygalacturonase QRT2
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
gra
Gossypium raimondii
Pathway
gra00040
Pentose and glucuronate interconversions
gra01100
Metabolic pathways
Module
gra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
105790298
Enzymes [BR:
gra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
105790298
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Motif
Other DBs
NCBI-GeneID:
105790298
NCBI-ProteinID:
XP_052490428
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Position
8:3086792..3091961
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AA seq
477 aa
AA seq
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MRTPSVYASSPRLMRVDTASSPNCPLTMRLARIHLLFEANEVNTSLSYICMKKNSVESKG
CIEDPFHSDVRQTHVYSRPTTYNQQDNVNPINNNEVWSRIDRVTLKVINVDEFGAKANGF
DDSQAFKEAWELACNSSQGAIVVVPKNKIYHLKPIDFFGPCNSPLIVKIHGTIKATVHHS
DYKAHGRRRCLYFANVQNLRVEGGGIINGNGRTWWQNSCKINIALPCKEAPTALTFSQCS
NLRVAGLRIRNAQQMHLSFNKCVNVKALNLSVIAPGNSPNTDGIHVSETHNIHIKNCVIK
TGDDCISVVSGSQNVRATDITCGPGHGISIGSLGARNSAAYVSNVIVNRATISDTTNGVR
IKTWQGGSGYAKNIKFQNIMVHNVSNPIIIDQNYCDHHKSPCPCKVSAVQVSNVIYENIR
GXSNVALKFNCSRRFPCREIFLQNVAITSSKEDKEHTAEASCTNIRLSYRGNVFPPC
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcgaactccttccgtttatgcgagctcccctcgactcatgcgagttgataccgcgagc
tctcctaattgtcctctcacaatgcgtcttgcgcgcatccatctgttatttgaagcaaat
gaagtcaacacatcattgagttacatatgtatgaagaagaattcagtagaaagcaaggga
tgtatagaggacccatttcacagtgatgttcgacaaactcatgtttatagccgcccaaca
acctacaaccaacaagacaacgttaatcccatcaacaataatgaagtttggtcgaggatt
gatagggtcactctcaaggtaatcaatgtcgatgaatttggagctaaagctaatggattt
gacgattctcaggcatttaaggaagcttgggagttggcttgtaactcgtctcaaggagct
attgtggtggtccctaagaacaaaatttatcatcttaagccaattgatttctttggaccc
tgcaactctcctctcatagtgaagatccatggaacaattaaagccactgtccatcactcg
gattataaagcacacggaagacgacgatgcctttactttgctaatgttcagaatttaagg
gtagaaggtggaggcatcatcaatggcaatggcagaacatggtggcaaaattcttgcaaa
attaacatagccctcccttgcaaggaagcaccaactgcgctaacctttagccaatgcagt
aatctgagagtagcagggctgcggatccgaaatgctcaacaaatgcatctttcatttaac
aaatgtgtcaatgtaaaagctctcaacctttccgtaattgctcctggaaacagccccaac
acggatggaatccatgtgtctgaaacccacaacatacacattaagaactgtgtcatcaaa
actggtgatgattgtatctctgttgtgagcggctcgcaaaatgtacgagccacagatata
acttgtggaccgggacatggaatcagcattgggagcttaggagctagaaattctgcagct
tatgtatctaatgtaatagtgaatagagcaacaatttcagataccaccaatggggttaga
ataaagacttggcagggaggatcagggtatgccaaaaacatcaaatttcagaatataatg
gtgcataacgtgagcaatcctataatcatagatcaaaactactgtgatcatcataaatca
ccatgcccctgtaaggtatcagcagtgcaagtgagcaatgtgatttacgaaaacatcaga
gggncctccaatgttgccctgaaattcaattgcagcaggaggtttccttgtcgggagatt
tttttgcaaaatgtagctataacatcatcaaaagaagataaagaacatactgcagaagct
tcatgcactaatattagattgtcttaccggggaaatgtttttccaccttgctga
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