Gossypium raimondii: 105790419
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Entry
105790419 CDS
T04129
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
gra
Gossypium raimondii
Pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105790419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gra03041
]
105790419
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105790419
Spliceosome [BR:
gra03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
105790419
Complex B
105790419
Complex C
U2 SnRNP specific factors
105790419
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105790419
NCBI-ProteinID:
XP_012473454
UniProt:
A0A0D2RTN9
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All DBs
Position
8:complement(4567858..4571666)
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AA seq
776 aa
AA seq
DB search
MSKRKFGFEGFGINRQSTYNFERSQAPQRLYVPPSSRHSHDNYEDNDLDDIDYADNNDTS
NDADTNDPTTSNGNGGEDDEIDPLDAFMQGIEEDLKAKPTPKPKEKAERYRDDEDEDDPV
ESFLRSKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGLLEYDSDDNPVVVDKKKIEPI
PALDHSSIEYEPFNKDFYEEKASISGMSEQEVAEYRKSLAIRVSGFDVPRPVKRFEDCGF
APELMRAIAKQGYEKPTTIQCQALPIVLSGRDVIGIAKTGSGKTASFVLPMIVHIMDQPE
LQKEEGPIGVICAPTRELAHQIFLEAKKFAKAYGIRASAVYGGMSKLDQFKELKAGCEIV
VATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT
MPRKVEKLAREVLSDPIRVTVGEVGTANEDITQHVHVIPSDSEKFPWLLEKLPGMIDEGD
VLVFASKKATVDEIESQLSGKGFKVAALHGDKDQASRMEILQMFKSGIYHVLIATDVAAR
GLDIKSIKSVVNYDIAKDMDMHVHRIGRTGRAGDKDGIAYTLITQKEARFAGELVNSLIA
AGQNVSMELMDLAMKDGRFRSKRNARKGGGKKGRGRGGGGSGRGVRGVDFGMGIGYNPES
SNASSQAVQSRNAAVNSLKTGMMAQMKSNFVAASTNPPSQGFNNSSSIRRPTLSGFVSGG
TIGGDINRSQMATSFSTAPTSGLNTSQNTGENTTQRSSESSRDRPRERRRPSGWDR
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacgcaaattcggattcgaagggtttgggataaaccgtcaatcaacctacaac
ttcgagcgatcccaagctcctcaacgcctttatgtccctccatcctctcgtcattcccac
gacaactacgaagataacgaccttgacgacatcgattatgccgataacaacgatacctcc
aacgacgccgacaccaatgaccccaccaccagcaatggcaacggaggggaagatgacgaa
atcgaccctctcgacgccttcatgcaaggtattgaggaggatttgaaagcgaagccgact
ccgaagcccaaggagaaggctgagaggtatagagacgatgaagatgaggatgatccagtg
gagagttttttgaggtcgaagaaggatgttgggctgacattagcggcggatgctttgcgt
gctgggtatgattcggacgaggaggtttatgccgctgccaaggctgtagatgcgggtttg
ttggagtatgattctgatgataatcccgtggttgtcgacaagaagaagatcgagccgatt
ccagcccttgatcacagttccattgagtatgaaccgtttaataaagatttttatgaggag
aaggcctcaatttcaggaatgagtgagcaggaagttgctgaatacagaaagagtttggct
attcgtgtttctggttttgatgtcccaagacctgttaagagatttgaagactgtggtttt
gcaccagagttaatgcgtgctattgcaaaacaagggtatgaaaagccaacaactattcag
tgccaagccttacctattgtcctttctgggagggatgttattggtatagcaaaaactggt
tccggtaaaactgcttcttttgtgcttcctatgattgtccacattatggatcagcctgaa
cttcagaaggaggaaggtccaattggagtgatatgtgcacctacccgagaactagcacac
caaatcttcttggaagcaaagaaatttgcaaaagcctatgggatacgtgcctctgctgtg
tatggtggaatgtccaaacttgatcaattcaaggaacttaaggcaggatgtgagatagtc
gttgctacacctggtcgattgatagacatgctaaaaatgaaggcactgacaatgatgaga
gcgacttatttggtacttgatgaggctgatcgaatgtttgaccttgggtttgagcctcag
ataaggtccattgttggccaaataagacctgaccgtcagacattactattttcagcaaca
atgccccgcaaagttgaaaagttagcaagggaagttctcagtgacccaatcagagtcaca
gttggagaggtgggaacagctaatgaggatattactcagcatgttcatgtaattccttct
gactctgagaagtttccctggcttctcgagaagctacctggaatgattgatgagggtgat
gttttggtgtttgcctccaagaaagctactgttgatgagattgaatctcagctctctggt
aagggttttaaggttgctgcccttcatggtgacaaagatcaggcttctcgaatggaaatt
ctacaaatgtttaaatctggcatctaccatgttctcatcgcaactgatgttgctgctcgt
ggtcttgacatcaagtcaattaagtcagttgtgaactatgatattgcaaaggacatggac
atgcatgtgcaccgtattggtagaacaggtcgtgctggtgacaaagatggcattgcgtat
actctgataactcaaaaggaggctcggtttgctggtgaattggtaaatagtttaattgct
gctgggcagaatgtttccatggaactgatggatcttgctatgaaggatgggagatttagg
tccaagcgtaatgcaagaaaaggaggtgggaagaaaggcagaggaaggggcggcggtggg
agtggtcgaggtgtgcgtggagttgattttggtatgggtattggatataatccagaatcc
agtaatgcttcatctcaggctgttcaaagtcgaaatgctgccgtaaattctctcaaaact
ggcatgatggcacaaatgaagagtaactttgttgctgcttcaacaaaccctccaagtcaa
ggcttcaataacagttcaagtatcaggagaccaactttatctggatttgtatctggcggt
accatcggtggagatataaataggtctcaaatggccacttcattcagcactgctcctaca
tcaggattgaacacttcacaaaatactggagaaaacactacccagaggagctccgagagt
tctagagatagaccaagagaaaggcgaaggccctctgggtgggaccgttag
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