Gossypium raimondii: 105790737
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Entry
105790737 CDS
T04129
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
gra
Gossypium raimondii
Pathway
gra03022
Basal transcription factors
gra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105790737
09124 Replication and repair
03420 Nucleotide excision repair
105790737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gra03021
]
105790737
03036 Chromosome and associated proteins [BR:
gra03036
]
105790737
03400 DNA repair and recombination proteins [BR:
gra03400
]
105790737
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105790737
Transcription machinery [BR:
gra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105790737
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
105790737
DNA repair and recombination proteins [BR:
gra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105790737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
SNF2-rel_dom
NAMPT_N
AAA_11
Motif
Other DBs
NCBI-GeneID:
105790737
NCBI-ProteinID:
XP_012473939
UniProt:
A0A0D2RVH9
LinkDB
All DBs
Position
8:9679912..9685499
Genome browser
AA seq
758 aa
AA seq
DB search
MKFQIEDVTVYFPYDHIYPEQYSYMIELKRTLDAKGHCLLEMPTGTGKTIALLSLITSYS
LSKPQSPMKLIYCTRTVHEMEKTLAELKILHNYQIKHLGPQARILAIGLSSRKNLCVNPT
VVAAENRDSVDAGCRKLTASWVRALAEENTDVTTCEFFESYEKAASAAVLPPGVYTLQEL
RAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID
NVCIEALSVSVRRQTLEGATRNLSRISQEIDRFKATDTSILRAEYNRLVEGLALRGNLPI
TDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLSGRLDTENVEKESPVGFVAS
ISSHAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHIQTICDFATLVGTYGRGFSTIIEP
FDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLLEMVSVVPDGIVCFFV
SYSYMDGIINTWNDTGILKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMIGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPSWILSHLQDANLNLSTDMALHIAREF
LKKMAQPYDKTGSSDKKTLLSQEELEKLGDRSMHEMSY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaagttccaaatcgaagacgtcaccgtctacttcccttatgatcacatttacccggaa
cagtactcttacatgatcgaactgaaacgaaccttagatgccaaaggacattgccttctc
gaaatgcctaccggaaccggcaaaaccatcgcgttactatctctcatcaccagctactct
ctctccaaacctcaaagccccatgaagctcatttactgtacacgcactgtccacgagatg
gaaaaaacactggccgaattaaagattttgcataattaccagattaaacatttaggaccc
caagctaggattcttgctattgggctttcctccaggaagaacttgtgcgtcaacccaacg
gttgtagccgcggagaaccgtgattcggtggatgctgggtgtaggaagttgacagcgagt
tgggttcgagctttggcggaggagaataccgatgtgactacgtgtgagttttttgagagt
tatgagaaggctgcttctgccgccgtgttgccacccggagtttatacccttcaggagttg
agggcctttgggaaggagaaagggtggtgtccgtactttttggctagacatatggtacag
tttgcaaatgtggttgtttatagttatcaatatttgcttgatccaaaggtggctggaatc
atatcaaaggaaatgcagaaagagtccgttgtggtctttgatgaggctcataatattgac
aatgtgtgtattgaagcacttagtgttagtgttaggagacagacacttgaaggagcgaca
aggaatcttagtaggataagtcaagagattgataggttcaaggccactgatacaagcata
cttcgtgctgaatacaaccgacttgtggagggtttggcgctgagaggaaacctacctatc
acagacaactggctttcaaatcctgccttaccggatgatattctaaaggaagctgtacct
ggaaatatccgtcgagctgagcacttcttgcatgttctacgtagattggttcagtatcta
agtggtagactggacactgaaaatgttgagaaagaaagccctgttggttttgttgcctct
atcagtagtcatgctggaattgaccagaaaacattgaaattttgttatgatcgtttgcat
tcactcatgttgaccctagaaataactgacacagatgagttcttacacatccaaacaata
tgtgactttgcaactcttgtaggcacttatggtcgtgggttttcaactattattgaaccc
tttgatgaaaggatgccacatattccagatcctgtcttgcagcttagctgtcatgatgct
tcacttgccataaagcctgtttttgatcgattccaatcagttgttattacatctggcaca
ctcagcccaattgatctgtaccctcgccttcttaactttcatccagttgttagtcgtagc
tttacaatgtccttgactagagattgcatatgtccaatggttctcacacgaggaagcgat
caacttcctgttagtaccaaatttgatatgagaagtgatcctggtgtcgtgaggaattat
gggaagctcttgttggagatggtctccgttgtccctgatggaattgtctgtttttttgtc
agttattcatacatggatggaattattaacacttggaatgacactgggattctgaaggaa
ataatgcaacataagcttgtcttcattgagacgcaagatgttgtagaaacgacattggca
ctggacaattatcgcagggcttgtgactgtggaagaggtgcagtatttttttctgttgcc
agaggaaaggttgctgaaggtatagattttgatcgacattatggcagactagtaatcatg
attggtgttcctttccagtatacgttgagcaagatattgctggcaaggttggagtattta
cgagacacattccagataaaggaaggagattttcttacttttgacgccttgaggcaagct
gctcaatgtgtgggccgagttatccgttcaaaggctgattatgggatgatgatatttgct
gataagaggtatagccgacatgacaagcgctcaaaattgccaagttggatactgtctcat
ttacaagatgcaaacctgaatttgagcactgacatggctctgcatatagcaagagagttc
ctaaaaaaaatggctcaaccatatgacaagactggtagcagtgacaagaagactttactc
tcacaagaagagttggagaaattgggcgacagaagcatgcatgaaatgtcgtattaa
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integrated database retrieval system
