Gossypium raimondii: 105790920
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Entry
105790920 CDS
T04129
Name
(RefSeq) nuclear pore complex protein NUP214 isoform X1
KO
K14317
nuclear pore complex protein Nup214
Organism
gra
Gossypium raimondii
Pathway
gra03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105790920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105790920
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
105790920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMTV_SAg
Motif
Other DBs
NCBI-GeneID:
105790920
NCBI-ProteinID:
XP_012474185
UniProt:
A0A0D2RWG2
LinkDB
All DBs
Position
8:16149977..16162844
Genome browser
AA seq
1821 aa
AA seq
DB search
MGSRLEICEENEGEHVETQDFFFEKIGEPVPVKSQPDSQFDLQSPPSQPLVLSQRFQLLF
LAHSSGGFLVARTKDVIDLAKDIREKASSSSIEDLSLVEVPIGKVHILALSTIDDTILAV
SVAADIHFFSVSSLLNKDIKPCFSTSLPQSSFVKDIRWRKKKDNSFLVLSDDRKLYHGTL
AHPLKHVMDNVDAVEWSAKGAFVAVARDNSLSILSSKFNEKLCVALSFKSWVGDSNDDCT
VKVDTIRWIRPDCIILGCFQFTRDAKEENYLVQVVKSKSGKITDATSDLVVLSFSDLFAG
LIDDIVPFGTGPYLFLSYLEQCKLAIAANRKNTDQHIVLLSWSLGETGEASVVDIERDNW
LPRIELQDNDDDNLIMGLCIDNVSVFGSVKVQLGVEEVRELSPYCVLICLTLEGKLIMFQ
VASARENDVPPDVSALSAKEEDTPVVVSAEIDPPELTYGQGEQKSELIALSLPLMDKGKT
ELLTNGSSDVNLSQMNVNSVTHATDNLFHNDDIKKAVSLKNSQSSEAVGQQKPPTSMLYQ
EAGTQQKLFFGGQGTNSGQSFLRTSQLEGSGNKVRDGSQTEAQKIPGFGSVTPVAKVSND
SLLQPNHESIPKMFELVKEPVGEAGSIGLQSTSVKLWPNPSSQPFSSGKFMVSKESDARA
SFSSPSNFQYASSQSTRGATSIPGGNVEKPSHLKDTTGISVSVNKISGTPVDSGAQKFSI
GGGNIESVPLIRGSQSSSLLNFAMEKSFNQKLHPPKDEYKSATQSRMLKSEPQLLKQFGN
IKEMAKELDTLLESIEEAGGFRDVCTVFQRSSVEELEQGIAVLSKKCRSWKNVMDEQLGK
IQQHLDKTVQVLARKIYIEGIIKQASDSQYWDLWNCQKLSSELELKQRHILKLNQDLTNQ
LIELERHFNTSELHKFGDDDGVRDGRRTLQSRFGPSRRVLSLHSLHSTMSSQLAAAEQLS
ECLSEQMAMLSVESPVKKQNVKEELFQMIGIAHDASFTSPHATKPSNKSKKLVLSSGSPA
SRNQSRRNQSSALKSSDPEYSRRRRESLDQSWASFEPPKTTVKRMLLQESANVKRSLLTD
KQNFSPYASEELTSLFSKELKVTSTMLHQSGNEVKTKIQDALPRQESELTVFRWANNSSL
LPPNYAGWKSSTVQTSNFNALSSASGSQPMLVQNSSGETHSIPVAKLNSGASQVERSNIS
SFNENEIQSTLQFRPNLHQESSISQVASLPKKSTDTLNSDGKGTVLANSALGDVKHVSST
TKSTLFGSNSNNSQFIPPAAVSASPAPSAKVSQFNVVTSKIQPSEKVSQSFAFSKPVADL
SSSVFSSSTPSLSSPFSTMTASSLTSVNVSSTETSPTSAPKFSFSTSFSAVPTSPATQSS
EPSSVVAVDANRKASSSSPSLVPFSAFVSSSDSLSFQPLEMPIPLPADLSPVSSSEILKV
EAQPHKEIHDLKKDGDPIIRAPPLQHELPATELSLKPKFAVSSPKTSETPTGVLSGSQTR
IIDLASPATNLASNPQPLQPSTGDSLSAPSSISINTANGKSGSLDLTQEDEMEEEAPETN
QMTEHGLGSLSSFGIGSNPNPTATKPNPFGAPFGVVATSAATSSFTSTVNPGELFRPASF
SFQSPQPSQSAQPASFGTFSGGFASGAPGQAPAQSAFGQPAQLGAGQQALGSVLGAFGQS
RQLGTALPGSGFASGSGFGGGFASPQSAAGFSNAATGGGFAGLGSGGGGFSGVASGGGFG
GLPLGGGGFGSLASGGLTGSASGGGGFAAPASGGGFAGAAGSGIGGFGAFGSQQRNAGFS
AFGGGGGQTGKPPELFTQMRK
NT seq
5466 nt
NT seq
+upstream
nt +downstream
nt
atgggcagccggcttgaaatttgtgaagagaatgaaggggagcatgtcgagacccaggat
ttcttcttcgagaaaatcggcgaacccgtgcctgtcaaatctcaaccggattcccagttc
gatctccaaagtcctccttctcagccccttgtcctctcccaacgtttccagctcctgttt
ctagctcattcttctggggggttcttggtggcgaggaccaaagatgtgattgatttagcc
aaggacattagggaaaaagcctcctcttcaagtattgaagatctgagtttggtggaagtt
cccattggcaaggttcacattcttgctctttccaccatcgacgacaccatacttgcagtt
tctgtggcagctgatattcatttcttcagtgtcagctcccttcttaataaggatataaag
ccatgtttctccacttcgctccctcagtcaagctttgtcaaggatattcgttggagaaag
aagaaggataactctttcctagttctttcagatgatagaaagctatatcatggaactctt
gcacatcctcttaagcatgtgatggataatgttgatgctgttgaatggagtgcaaaaggt
gcttttgttgccgtggcaagagataatagccttagtattttgtcatccaaattcaatgaa
aaattgtgcgtagctctttcattcaagtcttgggttggtgattccaacgatgattgcact
gtaaaagtggatactatcagatggattcgtcctgattgcattattcttggatgctttcag
tttaccagagatgcgaaagaagaaaattacctcgttcaagtagtcaaaagcaagtcaggc
aaaatcacagatgctacttctgatttggttgttctatcctttagtgatttgtttgctggt
ctaattgatgatattgtgcccttcggaaccggcccttacttattcttgagttatttggaa
caatgcaagcttgcaattgctgctaacagaaagaacacggatcagcatattgtgttactc
agttggtcacttggtgagactggtgaagcttcggttgttgatattgagcgtgataattgg
ctccccaggattgaacttcaagataatgatgatgataatttgatcatggggctttgcatt
gataacgtgtctgtgtttgggagtgttaaagtgcaacttggagttgaagaagttagggag
ctttcaccatattgtgttcttatatgccttactttagagggcaaacttattatgttccag
gttgcaagtgccagggaaaatgatgttccacctgatgtttctgccctttctgctaaagaa
gaggatacccctgttgtggtgtctgctgaaattgatccacctgaacttacatatggacag
ggtgaacaaaagtcagaactgatagctttgtctcttccattgatggataaaggcaaaact
gagcttctcaccaatggaagtagtgatgtaaacctttctcaaatgaatgtgaattcagtt
acacatgctactgataatctattccataatgatgatattaaaaaagcagtgtctttgaag
aactcccagtcttcggaagctgtaggccaacaaaaacctccaacctcaatgctgtaccaa
gaagcaggtactcaacaaaaattgttttttggagggcaaggtaccaattcaggacaatca
tttctgaggacttctcaattagagggatctggtaataaggtgagggatggtagtcaaaca
gaagctcaaaagattccaggatttggatctgttactcctgtggcgaaagtttcaaatgac
tccttattacaaccaaaccatgagagcataccaaaaatgtttgagctggttaaggaacca
gtaggtgaagctggatcaattggtttgcagagtacatctgttaagttgtggccaaatcca
tcatcccagccattttcaagtggaaaattcatggtttcaaaggagtctgatgccagagct
tcattttcatctccaagtaattttcagtatgctagttctcagagtaccagaggtgctaca
agcattcctggtggcaacgttgaaaaaccttcacatctaaaagatactactggtatatca
gtttctgtcaataaaatttcaggtacaccagtagatagtggggcccagaaattttcaata
gggggaggaaatattgagtcagtacctttaattcgtggctcacagtcatcctccctacta
aattttgcaatggaaaagtctttcaaccaaaagcttcatccccccaaggatgagtataaa
tctgcaacccagtcaaggatgttgaaatcggaaccacagttattgaaacaattcggcaat
attaaagagatggcgaaagaactagacacacttctggaatctatagaagaagctggtggc
tttagggatgtttgcactgtttttcagagaagttcagttgaagagctggagcagggcata
gcagttctttctaaaaaatgcaggagttggaagaatgtaatggatgagcagcttgggaag
atccaacaacatcttgataaaactgtacaagttttagcaaggaagatatacatagaaggc
attattaaacaagcttcagatagccaatactgggacctgtggaattgccaaaagttgagt
tctgagcttgagcttaagcagcgacatatattgaaattgaatcaagatttgaccaatcag
ttaattgaattagagaggcatttcaacaccagtgagcttcataaatttggtgatgatgat
ggagttcgtgatggtcggagaactttacagagtagatttgggccttcaagacgcgttctg
tccctgcattctttacatagcacaatgagttcacaactagcagctgctgagcaactttct
gaatgtctctcagaacaaatggctatgctgagtgtagagtcccctgtgaaaaaacagaat
gttaaggaggagttgtttcaaatgattggaatagctcatgatgcctctttcacctctccg
catgctacaaaacctagcaataagtctaagaaacttgttctttcctctgggtcccctgct
tctagaaatcagtcgaggcgaaaccaatccagcgcactgaagagttctgacccagaatat
tctaggaggaggagggaatcactggatcagagctgggctagttttgagcctccaaaaaca
actgtaaaaaggatgcttttgcaagaatcagcaaatgtaaaaagatcacttttaaccgat
aaacagaactttagcccttacgcctccgaggagttgacaagcttattctcaaaggaactc
aaagtaacttcaaccatgttgcatcaatctggaaatgaagttaaaacaaaaattcaggat
gcattaccgagacaggaatctgaattaactgttttccgatgggctaataatagttctcta
ttaccaccaaattatgctgggtggaaatcttctactgtgcaaacaagtaacttcaatgct
ctgtcatcagcatcaggatcacaacctatgttggtgcagaattcttctggggaaacacac
agtatccctgttgctaaactaaactccggagcttctcaggttgagagatctaatatatca
tctttcaatgagaatgaaatccaatccactctacagtttagacctaatctacaccaagag
tcatcaatctcccaggtggcttcattgccaaagaaatctactgacaccttaaattcggat
ggtaaagggactgtgcttgctaattcagcgctgggggatgtgaaacatgtctcatctacc
acaaagagtacactgtttggttctaatagtaacaactctcagttcatacctcctgctgct
gtttctgcatctcctgccccctcagccaaagtttcacaattcaatgttgtgacaagcaaa
atccagccgagtgaaaaggtatcacagtcttttgcattctctaaacccgttgcagatttg
tcatcttcagtattcagttcctcaactccatcattatcatcaccattttcaactatgaca
gcctcatcactcacatcagttaatgtctcatctactgaaactagtccaacatcggcacca
aaattttccttttcaacttcattttctgcggtgcctacttcacctgcaacacaatctagt
gaaccaagttctgtagttgcagtagatgctaatagaaaagcttcatcttcctcaccatca
ttagttcctttctctgcttttgtttcctcttctgattccttgtcttttcagcctctcgaa
atgcctatacccttgcctgctgatttatctcccgtgagttcttctgagattttaaaagtt
gaggcccaaccacataaggaaatacatgacttaaaaaaagatggggatccgattatacga
gcaccacctctgcaacatgaacttccagcaacagaattgagcttgaagcctaagtttgct
gtctcatcaccaaagacaagtgaaactcctactggagtgttatctggaagccaaacccgc
atcattgatcttgcaagtcctgcaactaatttggcatcaaatcctcagccgctgcagcct
tctactggagatagtctttcagctccttcgtcaattagtattaataccgccaatggaaaa
agcggaagtttggatctcacacaagaggatgagatggaggaggaggctcctgagacaaac
caaatgactgaacatggcttgggaagcttaagtagctttgggattggctcaaaccctaac
ccaactgctactaagccaaacccatttggtgctccattcggagttgtggctacaagtgca
gctacctcttcattcacctcaactgttaatcctggagagttgtttaggcctgcatctttt
agcttccaatctccacagccttcccaatcggctcaacctgcaagttttggtacattttct
ggtggctttgcttctggcgcccctggtcaagctcctgctcaaagtgctttcggccaacca
gcacagcttggagctggacagcaggctttgggatcagttcttggtgcttttggccagtca
aggcagcttggtactgctctaccaggaagtggttttgcttccgggagtggttttggtggt
ggtttcgcaagtcctcaatctgctgctggtttttctaatgctgcaacaggaggtgggttt
gctggtttgggttcaggtggtggtgggttttctggggttgcttcaggtggtggatttggt
ggtctgcctttaggcggtgggggatttggtagcttagctagtggaggacttacaggttct
gcctcgggtggtggtggatttgctgctcctgcctcaggtggtggttttgcaggagctgct
ggctcagggattggtgggtttggtgctttcggcagccaacaaagaaatgctggtttctca
gcctttggaggtggcggaggacaaactggaaaacctcctgagcttttcacacagatgaga
aaatag
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