Gossypium raimondii: 105791246
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Entry
105791246 CDS
T04129
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
gra
Gossypium raimondii
Pathway
gra03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
105791246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gra04121
]
105791246
03036 Chromosome and associated proteins [BR:
gra03036
]
105791246
Ubiquitin system [BR:
gra04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
105791246
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
105791246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_WDR3_1st
WD40_Gbeta
WD40
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
WDR55
Beta-prop_WDR3_2nd
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR41
Beta-prop_WDR36-Utp21_1st
EIF3I
MIOS_WD40
WD40_RFWD3
Motif
Other DBs
NCBI-GeneID:
105791246
NCBI-ProteinID:
XP_012474689
UniProt:
A0A0D2QWQ3
LinkDB
All DBs
Position
8:32835404..32836765
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AA seq
343 aa
AA seq
DB search
MENSTQESHLRSDNAVTYESPYPLYAMALSSTPAVTHLNHQRIALGSFIEDYANRVHIIS
FDPESLTLTTHPSLSFDHPYPPTKLMFQPHRKSPFSSSSDLLASSGDYLRLWEVGHSSIE
LISILDNSKTSEFSAPLTSFDWNDVEPNRIGTSSIDTTCTIWDIEKGVVETQLIAHDKEV
YDIAWGEARVFGSVSADGSLRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATT
LMDSNKVVILDIRSPTMPVAELDRHGASVNAIAWAPQSCKHICSAGDDTHALIWELPTVA
GPNGIGPLSMYSASSEINQLQWSAAQPDWIAIAFSNKMQLLKV
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcaactcaagaatcccacctccgatccgacaacgccgtaacctacgaatca
ccctacccactctacgccatggccttatcttccacgcccgccgtcacccatctcaaccac
caacgcatcgctctcggcagtttcatcgaagattacgctaacagagtccacataatctct
ttcgaccctgaatcacttaccctcacaacccacccatctttgtcgttcgaccacccttac
ccacccaccaaacttatgttccaaccccaccggaaatcccctttctcttcctcctccgac
ctcctcgcttcatccggtgactacctccgtctctgggaagttgggcactcttctatcgaa
cttatctccattctcgacaatagcaaaaccagcgagttttctgctcccttaacttccttc
gattggaacgacgttgaacccaatagaatcggaacatccagcatcgacaccacctgcacc
atttgggacatcgaaaaaggcgttgtggaaacccaattgattgctcacgacaaagaggtt
tatgacatcgcttggggtgaagctagagttttcggttccgtttccgctgatgggtcccta
aggattttcgatttaagggacaaagaacactcaaccatcatctacgaaagccctcaaccg
gacacccctttgttaagattagcttggaacaaacaagatttgaggtatatggctacgaca
ctaatggatagcaataaagttgtgattttggacataaggtcgcctactatgccggtggct
gagttggatagacatggagccagtgtcaatgcgattgcttgggctccccagagctgtaag
cacatttgctctgcaggggatgatacgcatgcccttatttgggagttgccaactgtagct
gggcctaacggaatcggtcctttgtctatgtactcggctagttccgaaattaatcagttg
cagtggtctgctgctcagccagattggattgccattgccttctccaacaaaatgcagctt
ctcaaagtttga
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