Gossypium raimondii: 105791593
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Entry
105791593 CDS
T04129
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105791593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105791593
03036 Chromosome and associated proteins [BR:
gra03036
]
105791593
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105791593
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
105791593
mRNA degradation factors
5'-3' decay
Decapping complex
105791593
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Gene silencing
piRNA pathway
105791593
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
DUF863
TFIIA
Motif
Other DBs
NCBI-GeneID:
105791593
NCBI-ProteinID:
XP_012475171
LinkDB
All DBs
Position
8:44799415..44804253
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AA seq
496 aa
AA seq
DB search
MNNRGRYPSVLGRGRGANANPSFQSRPEQPQYAQRNLVQNHHHHFQQQQHHHHHLQQQQH
QQQWLRRNQLPGGNDSTVADEVEKTVQSEAVDSSSQDWKARLKMPPSDTRYKTEDVTATK
GNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPA
LEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQP
VHLLVGTPGRILDLAKKGVCILKNCSMLIMDEADKLLSPEFQPSLEQLLCFLPPNRQILM
FSATFPVTVKDFKDRYLKKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQIN
QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFT
RGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGT
EIKQIPPHIDQAIYCR
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgaataatagagggaggtatccatcggtgctcggccgtggccgcggagcgaacgcgaac
cctagctttcaatcgaggccggagcaaccgcagtatgcgcagagaaatttggtgcagaat
catcatcatcattttcaacaacagcaacatcatcatcatcatctgcaacagcaacaacat
caacagcagtggctcagacgaaaccaattgcccggcggaaatgactccactgtcgccgat
gaggtcgagaagaccgtacaatctgaagccgtcgactcaagttcacaagattggaaggca
aggctaaagatgccaccatcagatacacgctacaaaacggaggatgtgacagctaccaaa
ggaaatgaatttgaagactactttctgaaacgtgaacttcttatgggaatatatgagaag
ggctttgaaagaccatctcctattcaggaagagagtattcccattgctttaactggaagt
gatattcttgctagagccaaaaatggaactgggaaaactgcagcattttgcattcctgca
ttggaaaaaattgaccaagataacaatgttattcaagttgttatacttgttccaacgcga
gaacttgctcttcagacatcacaagtttgtaaggaactcgggaagcatttacaaattcaa
gttatggtcacaacaggaggtaccagcctcaaggatgatattatgcgattgtatcaaccg
gtccatttactggttggaacccctggcagaatactagaccttgctaaaaagggtgtttgc
attttgaaaaattgttcaatgctcatcatggatgaggcggataaacttttgtctccagag
ttccaaccttctctagagcagctgctatgttttcttcccccaaatcgtcaaattttgatg
ttttctgccacatttcctgttaccgttaaggactttaaagacagatacctaaagaaacct
tatattattaatcttatggatgagcttactctgaagggtattacacaatattatgccttt
gtggaagaaagacagaaagtccactgcctaaacactcttttctctaagctgcaaataaac
caatcaatcattttctgcaactctgtgaatcgggtggaactgttggccaagaaaattaca
gagcttggctactcatgcttttatatccatgcaaaaatgcttcaggatcatcgtaacaga
gtatttcatgatttccgcaatggtgcatgcaggaaccttgtttgtactgatcttttcaca
aggggtatagatatccaagctgtgaatgttgttataaactttgacttccccaagaactca
gaaacataccttcatagggttggtcgatcaggaaggtttggtcatcttggattagcagtg
aatttgatcacttacgaggaccgctttaacttgtataggattgaacaagaacttgggacc
gaaattaagcaaatccctcctcatattgatcaggctatttactgccggtga
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