Gossypium raimondii: 105791976
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Entry
105791976 CDS
T04129
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
gra
Gossypium raimondii
Pathway
gra03013
Nucleocytoplasmic transport
gra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105791976
03015 mRNA surveillance pathway
105791976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105791976
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105791976
5.6.2.5 RNA 5'-3' helicase
105791976
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105791976
mRNA cycle factors
Common to processing body (P body) and stress granule
105791976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
UvrD-helicase
NPHP3_N
nSTAND3
Viral_helicase1
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_25
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
105791976
NCBI-ProteinID:
XP_012475768
UniProt:
A0A0D2R7F3
LinkDB
All DBs
Position
8:50829329..50839940
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AA seq
1263 aa
AA seq
DB search
MDSQYETASQPDPATDAYTFLEFNTQGESDFEYTDFRDPIRSWPTPSDAHSAERSGSDHH
SDTAASSSPSSASKGAGRGVASNNNSHSSSISNSAAVVDALATGISGLNFEETVGDEDGG
YDYGKGDFAEHSCRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRSKHKEV
CLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLSQ
WCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDE
PQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVFP
KEDNELRLVPGDELRLRYSGDAAHPVWQAVGHVIKLTAQEEVALELRASQGVPIDVNHGF
SVDFVWKSTSFDRMQGALKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLP
ELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ
LAEKISTTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGEL
SSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECL
IPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPC
LSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNR
TEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVD
SFQGREKDYIIVSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNG
LLTHYKENECLVEGPLNNLKQSMVQFQKPKKIYNERRLFFGGGPGIVPNDNFGAASSSPN
IDRRSSRARGTYMPPGPPNGTHKPGVHPTGFPMPRVPLPPFPGSPSQPYAIPSRGAVHGP
VRAVPQVPQPGSRGFGAGRGNASAPIGHHLPHQQGTQQNVGTIGSPFNFPPLDIPNSQPS
VGGPLSQPGFVNNMPVQGASQTIRDGFSMGGTSQDFLGEDFKSQGSHVPYNIADFSTQGG
YAVDYASQGAQSGFPGNFLNQNSQAGYSRFGAGNDFMTQDYMNHGSQGLFTQAGFNDPSQ
DDASQSHFGAANPNQLQSQGLMNSLYSQPFAHYNTQPLNLQSPQQQQPQQGQGSQNQNLH
YNG
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaatacgagacggcctcgcaacctgacccagccaccgacgcttacaccttc
ctcgaattcaacacccaaggtgagtccgatttcgagtacacggacttccgtgatccgatt
cgttcatggccgacaccctccgacgcccactccgccgaacgatccggctccgaccaccac
tcggacactgctgcttcctcttctccctctagcgcttcgaaaggcgctggccgtggcgta
gcgagcaataacaacagccatagcagtagtattagcaatagtgcggccgtggtcgatgcg
ttagccacggggatcagtggattgaattttgaggagacggtcggggatgaggatggcggg
tatgactacggaaaaggggatttcgccgagcattcttgtcggtattgtggggtttcaaac
ccggcttgcgtggttcgctgtaatgtcccttcgtgtaggaagtggttttgtaattcaaga
gggaatacatccggctcgcatattgttaatcatctcgtgagatccaaacacaaggaagtc
tgccttcataaggatagtcctttgggagaaacaattcttgaatgctacaactgtggatgc
agaaatgtttttcttcttggttttatatctgctaagacagagagtgttgtcgttcttctt
tgtagagaaccttgtttgaatgtcaatgctttgaaggacatgaattgggatttgagtcag
tggtgcccccttattgatgataggtgctttctgcagtggttggttaagatcccttctgaa
caagaacagttaagggctcgacaaataagtgctcaacaaataaacaaggtggaagagctt
tggaagacaaatcctgatgcctcctttgaagatcttgagaagcctggtgtagatgatgaa
cctcagccagtggcattgaagtatgaagatgcttatcagtatcaaaatgttttcgcacct
cttattaagcttgaagctgactatgataaaatgatgaaagaatctcaaagcaaggacaat
gtcacagttcgttgggatatcgggctaaacaagaaacgaattgcatattttgtctttcca
aaggaagacaatgaactccgtcttgtacctggtgatgagttgcgactgcgttattcagga
gatgctgcacatccagtgtggcaggctgttgggcatgtgatcaagctaacggcacaagag
gaggttgcacttgagcttcgtgctagtcagggagttcctattgatgtgaaccatgggttt
agcgttgattttgtatggaaaagtacaagttttgaccggatgcagggggcattgaaaaca
tttgcagttgatgaaacaagtgttagtggatatatttaccatcaccttctcggccatgaa
gttgaggttcagatggttcgtaatacactgcctcgtcgttttggtgcacctggtctgcca
gaattgaatgcatctcaagtttttgcagtgaagagtgttcttcagaagcctataagcttg
attcaaggcccccctggcacaggaaaaactgtgacttctgccgccattgtctatcacatg
gccaaacaggggcaggggcaggttctggtctgtgctccaagtaatgtggctgttgatcag
ctagctgaaaagataagcacaactgggttaaaggttgtaaggctttgtgcaaagtctaga
gaagctgtcagttctcctgttgaacatttgacattgcattatcaggtccgacatcttgat
acatctgagaagagtgaacttcacaagttacaacaattgaaagatgaacaaggtgagttg
tcaagcagtgatgagaaaaagtacaaagcattgaagcgagcaacagagagggaaatatca
caaagtgctgatgtcatttgttgcacttgtgttggggctggagatcccagacttgccaat
tttaggttccgccaggtacttattgatgagtctactcaggcaacagaacctgagtgtctc
attcctttagttcttggagtgaagcaggttgtccttgttggtgatcattgccaacttggt
cctgttataatgtgcaagaaagcagctcgtgctgggctagcgcagtctctttttgaacgt
ctagttttacttggtgttaaacctattagattgcaggttcaataccgtatgcacccatgt
ttgtcagagtttccttctaacagtttctatgaaggcacattacaaaatggagtgacaatc
aatgaaaggcaatcatcaggcattgatttcccttggcctgtgcctaatcgtcccatgttt
ttctatgtacagatgggacaagaggagattagtgctagtggaacatcatatctcaatcga
actgaggctgcaaatgttgaaaagatagttaccacattcttgaggagtggtgttgttccc
agtcagattggggtcataacaccttatgagggacaacgggcatatattgtgaactatatg
tcaagaaatggttctttgaggcagcagctttacaaggaaattgaggttgcaagtgttgac
tcattccaaggacgggaaaaggattacatcattgtgtcttgtgtgagaagtaatgaacat
cagggtattggctttctaaatgaccctcgaaggcttaatgtcgccctaacacgtgctcga
tatggtattgtaattcttggaaaccctaaagttcttagcaaacagcctctatggaatggt
ttattgacacattacaaggaaaatgagtgtctggttgaaggacccctcaataacttgaag
cagagtatggttcaattccaaaagcccaaaaagatctacaatgaacggaggctgttcttt
ggtggtggacctggcattgtacctaatgataattttggggctgcctcatctagtccaaac
attgatagaagaagcagccgtgcccggggtacttatatgcctcctggtccacccaatggt
acacataagcctggagtgcatcctactggattcccaatgccccgggttcctcttccacca
tttccaggctctccttctcagccttatgctattccatcccgtggagctgtacatggacca
gtgagagctgttcctcaagtccctcaaccaggaagtcgaggctttggggctggtcggggt
aatgccagtgctcctattggccatcatctcccacatcagcaaggcacacagcaaaatgtc
ggtaccatcggatctccttttaacttccctcctctggatatcccaaacagccagccatct
gtaggtggtccattatctcaacctggatttgttaacaacatgcccgtccaaggggcaagc
cagacaattcgtgatggattttcaatgggaggaacgtcccaggacttcttgggtgaggac
ttcaaaagccaaggctcacatgttccttataacattgctgatttttcaacgcagggtggc
tatgcggttgattatgcttcacaaggagctcagagtgggtttccagggaacttcctaaac
cagaattctcaagctgggtattctcgttttggtgctggaaatgatttcatgactcaggac
tacatgaatcatggatcacaaggcctgtttactcaggctggctttaatgatccttcacaa
gatgatgcatcacagagccactttggtgcggctaatcccaaccagcttcagtctcagggt
ttgatgaactctctctactcccagccctttgcacactacaacacacagccactaaacttg
cagtctcctcaacagcagcaaccacagcagggccagggttcccaaaaccagaatcttcac
tataatggttaa
DBGET
integrated database retrieval system
