Gossypium raimondii: 105792313
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Entry
105792313 CDS
T04129
Name
(RefSeq) protein CHROMATIN REMODELING 8 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
gra
Gossypium raimondii
Pathway
gra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
105792313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gra03036
]
105792313
03400 DNA repair and recombination proteins [BR:
gra03400
]
105792313
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
105792313
DNA repair and recombination proteins [BR:
gra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
105792313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
AAA_30
DUF3371
Motif
Other DBs
NCBI-GeneID:
105792313
NCBI-ProteinID:
XP_012476278
UniProt:
A0A0D2R276
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All DBs
Position
8:complement(55946743..55952610)
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AA seq
1225 aa
AA seq
DB search
MEEEEDRILLSSLGVTSANPEDIERDVLAKAENNALDGSEVGGSTEEEPADKLEGNNPSS
SANQVKLLNKLRAVEFEIDAVASTVEERKDVTSGDHDAKDEHVEEGNREDDDESAMQLHS
RDSTLQRALATDRLKSLKNTKAQLEKELSGLLKESSSEGVKHDKLIKDLVKEEPRLKRKS
KEIQKPSKTKQKRKKSVSFNDDVDFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFE
RRLQQPGTSNEHSVPYEEDEKDDIVSASVARVAKSISEAAQVRPSTKLLEPDALPKLDAP
TFPFQRLKKSLKFSQSKEVEENKGSKRKKKRPLPDKKWRKRISREERDMEVGEDVRDNLT
SHDEEEDQEGSEDMDDNDPAYVTLEGGLKIPETIFSKLFDYQKVGVQWMWELHCQRAGGI
IGDEMGLGKTVQVLSFLGALHFSNMYEPSIVVCPVTLLRQWKREARRWYPKFHVEILHDS
AQDPAYKKNQAKSNEESDYESEGSVDSDYEGNLSSKSSKKWDSLINRVLRSKSGLLITTY
EQLRVIGEKLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLSEL
WSLFDFVFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLVMPYLLRR
VKADVNAHLPKKAEHVLFCSLTAEQRSVYRAFLASSDVEQILDGGRNSLYGIDVMRKICN
HPDLLEREHSCQNPDYGNPERSGKMKVVAQVLQVWKDQGHRVLLFAQTQQMLDILENFLT
TSGYCYRRMDGHTPVKQRMALIDEFNNSDDIFIFILTTKVGGLGTNLTGANRVIIFDPDW
NPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFF
KARDMKDLFVLNDEGENGSTETSNIFSQLSEDVNIVVMQKDKQHKQEHLRAAGSHSDHGG
GRNGNSLNGIHSKRKGKEKDDHSDGEVDEEKNILRSLFDAQGIHSAVNHDAIVNANDEEK
VRLEEQASQVAQRAAEALRQSRMLRSHDSISVPTWTGKSGAAGAPSAVRKKFGSALNAQL
VKPSGESSSTGIAAGAAAGKALSSAELLARIRGNQEQAIGAGLEHQFGSVSSSSNTTRPS
INRTSRSWSSSNVSSVQPEVLIRQICTFIQQKGGSTDSASIVDHFKDRIPSNNLPLFKNL
LKEIAKLEKDPNGSRWVLKPEYRQQ
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaggaggataggatattgttgagtagtttaggtgttacgtccgcaaatcct
gaggatatcgaacgggatgtattagccaaggcggaaaacaatgctttggatggtagtgaa
gtaggagggagcactgaggaggaaccggccgataagttggaagggaacaacccatcgtcg
tcggccaatcaggtgaaactcttgaataaattgagggctgtggaattcgaaattgatgct
gttgcatccactgttgaagaaaggaaagatgtcacaagtggtgaccatgatgcgaaggat
gagcatgtggaggaagggaatagagaggatgatgatgaaagtgctatgcagttacattcg
cgtgattcaacccttcaacgtgccttagctactgataggctaaagagtctcaaaaacact
aaggcccaacttgagaaagaactgtcggggttactcaaagaaagttcgtccgagggtgta
aagcatgacaagttgataaaagacctggtgaaggaagagcctaggctgaaaaggaagtca
aaagaaatccaaaagcctagcaaaactaaacaaaagcggaagaaatcagtttcttttaat
gatgatgttgattttgatgcagtgttggatgcagcatctgcaggatttgtggaaactgaa
agggatgaactggtgcggaaggggatattaaccccttttcataagcttaagggatttgag
cgccgtcttcaacagcctggtacatcaaatgagcacagtgttccttatgaagaagatgag
aaagatgatattgtttctgctagtgttgctagagttgcaaagtcgatatcagaggctgca
caagttcgcccatcaacaaaactacttgagcctgatgctttgccaaagcttgatgcaccc
acctttccttttcaaaggctaaaaaagtctttaaagttttctcagtcaaaagaagtagag
gagaataaaggctcaaaacggaaaaagaagaggcctttgcctgacaagaaatggagaaag
cggatctctcgtgaggaaagagatatggaagtgggagaagatgtgagggataacttgact
tcccatgatgaagaggaagaccaagagggctcggaggatatggatgataatgaccctgct
tatgtaacacttgaaggcgggctaaaaatccctgaaaccatttttagcaagctttttgac
tatcagaaagtgggagtacagtggatgtgggaactacattgtcaaagagcaggtgggatc
attggggatgaaatgggtcttggcaagactgtccaggtcttgtcttttcttggagctttg
cacttcagtaacatgtatgagccaagcattgttgtctgccctgtaacactcttacgacaa
tggaaaagggaggcacgtagatggtatccaaaatttcatgtcgagatactacatgattct
gctcaagatcctgcttacaagaagaatcaagccaaatctaatgaagaaagtgactatgaa
agtgaaggatcagtggacagcgactatgaagggaacttgtcttctaaaagcagcaaaaaa
tgggattctttgataaatagagttttgcggtcaaaatctgggttgttgattacaacttat
gagcaactccgagtgataggggaaaagttgcttgacatagaatggggttatgcagttttg
gatgaaggacatcgaatccgaaatccaaatgctgaaatcactctggtttgtaaacagctt
caaacagttcaccgtataataatgaccggtgcaccaattcagaacaagcttagtgaacta
tggtcattatttgattttgttttccctgggaagttgggtgtcttacctgtatttgaggca
gagtttgcagtccctatatctgttggtggatatgccaatgcttcaccattacaggtatca
acagcctacagatgtgctgttgtcctccgtgatttggtcatgccatatctactccggcgc
gtgaaggctgatgtgaatgcccatctgcctaaaaaggcagaacatgtacttttttgtagc
cttactgccgaacaaagatctgtctatagagcatttcttgctagctcagatgtggaacaa
atactggatgggggtagaaattctctttatggaattgatgtgatgcgtaagatctgtaac
catcctgatctgcttgagagagaacattcctgccagaatccagattacggaaatcctgaa
cggagtgggaaaatgaaagtggttgcccaagttctccaggtttggaaggatcagggccat
cgtgtccttttgtttgctcaaacacagcaaatgcttgacattcttgaaaacttcttaact
acaagtggctattgctatcgacgaatggatggacatactcccgtaaaacagagaatggct
ttaatagatgaattcaacaactccgatgatatatttattttcattttgactacgaaagta
ggtggtttaggaacaaatttaactggagctaacagggtgatcatctttgaccctgattgg
aacccgtcaacggacatgcaggcaagggagcgtgcttggcgtattggtcagaaaagagac
gtaactgtttatagattgattactcgtggaacaatcgaagagaaggtgtaccatcggcag
atttacaaacattttcttaccaataagatactgaagaaccctcagcagagaagattcttt
aaagctcgagacatgaaggatcttttcgttctgaatgatgaaggagagaatgggtcgacc
gaaacatctaatattttcagtcagttgtcagaagatgtaaatatcgttgttatgcagaaa
gataagcagcataagcaggaacatttgagagcagctggttctcattctgatcatggtggt
ggtagaaacggcaatagcttaaacggcattcattcaaagaggaaaggaaaagaaaaagat
gatcatagtgatggtgaagtagatgaagaaaaaaatattttgaggagcctttttgatgcc
caaggaatacatagtgctgtgaaccatgatgccatagtgaatgccaatgatgaagagaag
gtgaggcttgaggaacaggcttcacaagtggcacaaagagcagcggaagcattacgacaa
tcacgaatgcttcgaagccatgatagtatttccgttcctacttggactgggaaatctgga
gctgccggtgcaccgtcagcagttcgaaagaaattcggctcggctttgaacgctcagtta
gtaaaaccctcaggtgagtcatctagtaccggcatagcagctggggctgctgctggcaag
gcattatcttcagcagaattgctagctcgaatccgcggaaaccaagaacaagccattggt
gctggacttgaacatcagttcggatcggtttcaagttcgtcgaacaccacaagaccctcc
attaacaggacttctaggtcctggtcatcttctaacgtatccagcgtgcagcctgaggta
ctaatacgtcagatatgtacattcatacaacaaaaaggcggcagcacggattcagccagc
atcgtggatcatttcaaggaccgaataccatcaaacaatctgcctttgtttaagaatcta
ttgaaggaaattgctaaactagaaaaagatccgaacggatcacgttgggttctaaagcca
gagtatcggcagcaataa
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