Gossypium raimondii: 105792734
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Entry
105792734 CDS
T04129
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
gra
Gossypium raimondii
Pathway
gra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105792734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gra03036
]
105792734
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
105792734
SWR1 complex
105792734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
Myb_DNA-binding
HDA2-3
Motif
Other DBs
NCBI-GeneID:
105792734
NCBI-ProteinID:
XP_012476931
UniProt:
A0A0D2N3M5
LinkDB
All DBs
Position
8:60359615..60378461
Genome browser
AA seq
2042 aa
AA seq
DB search
MASKGLRPKLEHETKARRQKALEAHKEPQRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
KKVALRASKGMLDQATRGEKKLKEEEQRLRKVALNISKDVKKFWMKIEKLVLYKHQMELD
EKKKKTLDKQLEFILGQTERYSTMLAENLVDPYKPVQQHPAQNQINSPGKADMNEIDEPL
DLNADADEDFSIHSDQESEDDEQTLEDDEALITAEERQEELAALHSEIDLPLEELLKRYA
GETADGECSPDTREDRHECTSGQDDSSKGNGSLISPSTPSSKVETTNLLVRRSNESNGGL
SKSENYSSDIEASSPRNLSESSGELPKDVSYDFSDEQEDGDFTLTGEETVHHMDDETTLL
EEEELAKADSSNPIDEIALLQKESEIPVEELLRRYKKDFSADGASGDESDYASAFSEDIL
DSSAMHQNVEAKEGVSKDENLESSAPQGVEHPPAEKEAASPDRKSEDGMESENRIADAAA
AARSAQPTGNTFLTTNVRTKFPFLLKHPLREYQHIGLDWLVTMYEKRLNGILADEMGLGK
TIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLRWCPAFKILTYFGSAKERKLKR
QGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKR
RILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMIEGQERVNKEVVDRL
HNVLRPFILRRLKRDVEKQLPMKHEHVIYCRLSRRQRNLYEDFIASSETQATLASANFFG
MISVIMQLRKVCNHPDLFEGRPIVSSFDMGGINIQLSSSVCSIISPGPFSTVDLKGLGIL
FTDIDFSMTSWESDEVEALVTPKSLIEERVDQDNLEEIRPLSRHKGNLHETNIFEEIRKA
LREERLREAKERAAAIAWWNSLRCRKKPVYSTTLLELVSVKHPAFDIHRKKADNRSYLYS
SKLAEIVLSPVERFQTMIHLVESFMFAIPAARAPAPVCWCSKTGTSVFLHPTFVEKCAAN
LFALLTPIRPAIVRRQVYFPDKRLIQFDCGKLQELEILLRRLKSEGHRALIFTQMTKMLD
ILEAFINIYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTV
IFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQS
GGYNTEFFKKLDPMELFSGHRTLSVKSQKEKNLNSGIKDSVSNADVEAALKYAEDEADYM
ALKKVEQEEAVDNQEFTEEAMSKVEDDEFANEDDMKADESTDQAGCMITSNKDDGLILNG
SGSIEDKALILASKEDDVDMLADVKKMAAAAAAEGQAIPSLENQLRPIDRYAIRFLEVWD
PIIDKGETEPEIGFEEAEWELDRIEKYKEEMEAEIDDDEEPLVYEKWDADFATEAYRQQV
ALAQHQLMEELEHEAKEKEEADEANFDAMNEMTSEPKAKSKKKKKPKKAKFKSLKKGSLN
SEVKPAKQGTKAEPMSIDDDVDSPEELSYSDITPPSSNMQKKRKKVEIVHDSEEAKSSKK
PKKLKKPSELHPGECVEVKPCESLSVELEPKPASRSKTGGKFSITSMPMKRVLMIKPEKL
KKGNIWSKDCVPSPDSWLAQEDAILCAVVHEYGPSWSLVSDTLYSMAAGGFYRGRYRHPV
HCCERFRELIQRHVFAAPDSLGNEKISYAGSGKALLKVTEDNIRMLLTFAATQPDHELLL
QKHFTFLLSSVWRVTHRPEHQQNVSSARNGVRLGGRFLSPFLGHTPQRSAQEAAQRMKFT
NLRECSKLLSAALHDASNRQWSEAGFLSDREDSQVIEESLELTLEIQRENDDSMIPFPRV
MNLSVYGPNPATSINKTAGEDHLKASSVLAENRFRAATMAGVEGGQHWASAAFPANDSKT
RSGSKLQSLGKHKLPASDTARPKSKLKKASTEHSDVPNLHAVQVFQPVSTIASKDPNLRC
DPTLVTNDGSWTNGVGSNFCSSMDEAFPSEVESLDIVPHNYTPGFISGLDDCSMLPDYTD
IG
NT seq
6129 nt
NT seq
+upstream
nt +downstream
nt
atggcttctaaaggactgaggcctaagcttgagcatgagacaaaagctaggcgtcagaag
gctcttgaagcgcataaagagcctcaacgtcctaaaactcactgggatcatgttttagag
gaaatggtttggttgtcgaaggactttgagtcagagaggaaatggaaattggctcaggca
aagaaggttgccttaagagccagcaagggcatgttggatcaggctaccaggggagaaaag
aagttgaaggaggaggaacagcggttgcggaaagttgcacttaatatttcgaaggacgtg
aagaaattctggatgaaaatagagaaactggtgctttacaagcatcagatggagcttgat
gagaaaaagaaaaagacacttgataaacaacttgaatttattttagggcaaactgagagg
tactcaacaatgttggcagaaaatttagtggatccatacaaacctgtgcaacaacatcct
gctcaaaatcaaataaactcgcctggtaaagcagatatgaatgagattgatgaacccttg
gacttgaatgctgatgctgatgaagattttagcatacactctgatcaagaatcagaagat
gatgagcaaactctggaggatgatgaggctcttataactgctgaagaaagacaagaagaa
ttggcagctttgcacagtgaaatagatcttccacttgaggagctccttaagcgatatgct
ggggaaacagctgatggagaatgtagtccggatacgagggaggacagacatgagtgtaca
tcagggcaagatgatagtagtaaaggcaatggtagccttatttctccttccactccttcc
agtaaagttgagacaaccaacttgcttgttcgtcgttctaatgaaagcaatggtggcttg
tccaagtcagaaaactactcatcagatattgaggcatcctcccccagaaatctgtcagaa
agctctggggagctaccgaaagatgtttcatatgatttcagtgacgagcaggaggatggt
gattttacccttactggagaagagacggtacatcatatggatgatgagacaacactgttg
gaggaggaggaactagcaaaagcagattctagcaatcccatagatgagattgcgttactg
caaaaggagagtgaaattcctgtggaagaattgcttcgaaggtataaaaaggacttcagt
gctgatggtgcgtctggagatgaatcggactatgcctcagctttttcagaggacatcttg
gattcttcagcaatgcatcaaaatgttgaagcaaaggagggtgtttctaaggatgaaaat
cttgaatccagtgctccccagggtgttgaacatcctcccgcagaaaaggaggcagcaagc
cctgatagaaagtcagaagatggaatggaaagtgagaacagaattgctgatgctgctgct
gctgcgagatcagcacaaccaactggcaatacattcttaactactaatgttcgtacaaag
ttcccttttcttctcaaacaccccctccgcgaatatcagcatattggcttggactggctt
gttactatgtatgagaaaaggttaaatggaatactagctgatgaaatggggcttggaaag
acaatcatgacaattgctcttcttgcacatctagcttgtgaaaagggaatatggggtcct
catctcattgtggttcctacaagtgtcatgctcaactgggaaactgagtttcttagatgg
tgtcctgccttcaaaatcctgacatactttggaagtgccaaagagcgcaaattgaagagg
caaggctggttgaaaccaaactcatttcatgtatgcataactacttacagactggttata
caggattccaaggtcttcaaacgaaagaaatggaaatacttgatcttggatgaagctcat
cttattaaaaattggaaatcccaaagatggcaaactcttttgaacttcaattcaaaacgg
cgtatcttgttgaccggtacaccacttcagaatgatctcatggaactgtggtcactaatg
cattttctaatgccccacatttttcagtctcatcaagaattcaaggattggttttgtaat
cctatatcaggcatgatagaaggacaagaaagagttaacaaagaggttgttgatcgtttg
cataatgtcctccgtccttttatactgcgccgattaaaaagggatgtcgaaaagcagctt
ccaatgaaacatgagcatgtcatatattgtaggctctcaagacggcagcgtaacttgtat
gaagacttcattgccagttctgagacacaagccactcttgctagtgccaatttttttggg
atgatcagtgttatcatgcaactgcgaaaagtctgtaatcatcccgacttatttgaggga
cgaccaattgtgagttcttttgatatgggtggtattaatatccagttgagtagttctgta
tgttcaattatttcacctggtccattttcaactgtagatcttaagggtttgggaatttta
tttactgatatcgattttagcatgacatcttgggagagtgatgaagtagaagctctggtt
actccaaaaagtttaatagaagaacgtgttgaccaggataatcttgaggaaattaggccc
ttgtctagacataaggggaacttgcacgagacaaatatatttgaagagattagaaaggct
ttaagagaagagaggctaagagaagcaaaagaacgagcagcagcaattgcttggtggaat
tctttgagatgccggaaaaaaccagtttactcgacaacattacttgaactggtatctgtg
aagcaccctgcatttgatattcaccgtaaaaaagctgacaaccgatcctacttgtactcc
tctaagcttgctgagattgttctttctccagttgaacgcttccagacaatgattcatctg
gttgagtccttcatgtttgcaatcccagcagcacgggccccagctcctgtttgttggtgc
agcaaaacgggaacttctgtgttcctgcatccaacatttgtagaaaaatgtgctgcaaac
ttgtttgcccttctaacacctattaggcctgcaattgtccgtaggcaggtatattttccg
gacaagcgattgatacagttcgactgtggtaagctacaggagcttgagattttgctacgg
agattgaagtctgaaggtcatcgggcattaatatttacccaaatgaccaagatgcttgac
atattggaggctttcataaatatatatggatatacttacatgcggctggatgggtccact
caacctgaggagaggcaaacattaatgcaacgatttaacactaatcctaaaatttttctt
ttcatcttatcaacccgtagtggaggagttggtattaaccttgttggggctgatacagtt
atattttatgatagtgattggaatcctgccatggatcagcaagctcaagatcgctgccat
cgaataggacagacacgcgaagtgcatatctatcgtctaatcagtgagagcaccattgaa
gaaaacattttgaagaaagcaaatcagaagcgtgcccttgatgacctagttatacagagt
ggagggtacaatactgaattttttaagaagcttgatcccatggaattgttttcgggtcat
aggactctttctgttaagagtcagaaagagaaaaatctcaacagtggcatcaaggactct
gtatctaatgctgatgtagaagctgctttgaagtatgctgaagatgaagcagattacatg
gcattgaagaaagttgaacaggaagaggctgttgacaatcaggagtttacagaggaagcc
atgagcaaggtggaagatgatgagtttgcaaatgaggatgacatgaaggctgatgagtca
actgatcaggctggatgtatgatcacttcaaataaagatgatgggctaatattgaatggc
agtggttctattgaagacaaagctcttattcttgctagcaaagaagatgatgttgatatg
ctggccgacgtgaagaagatggctgctgctgcagcagcagaaggacaagctatcccatcg
cttgagaatcagttgagaccaattgatcgatatgcaatccgttttctggaagtatgggat
cccattatagacaaaggagaaacggagcctgaaattgggtttgaagaggcagaatgggaa
cttgatcgaattgagaagtacaaggaggaaatggaagctgagattgatgatgatgaggaa
cctctagtgtatgagaaatgggatgctgattttgctacagaagcttatcggcagcaagtt
gctttggctcaacatcagttaatggaagaactagaacatgaagccaaggagaaggaagag
gcagacgaagcaaattttgacgcaatgaatgaaatgactagtgaacctaaggcaaaatct
aagaagaagaagaagccgaagaaagcaaagtttaaatctctgaagaagggatctttaaat
tctgaagtgaaacctgcaaaacagggcacaaaagcagaacctatgtccatagatgacgat
gtcgactcgccagaagagctctcttattctgatattacgccaccctcttcaaatatgcag
aaaaagcgtaagaaggttgagatagtgcatgatagtgaagaagcgaagagctcaaagaag
cccaaaaaacttaagaagccttctgagctacatcctggtgaatgtgtggaggtaaaacca
tgcgagagcctttctgttgagcttgagccgaaacctgctagtaggagcaaaacgggaggc
aaattttccattacatccatgcccatgaaacgagtcttaatgataaaacctgagaaatta
aagaagggcaatatctggtctaaggactgtgttccatcacctgattcttggttggcacag
gaggatgctattttatgtgcagttgtgcatgaatatggcccaagttggagtttggttagt
gacacactctacagcatggctgctggtggcttttacaggggtagataccgccatccagtt
cattgttgtgagaggttcagggaactaattcaaagacatgtttttgctgcaccggacagt
ttgggtaatgaaaagatcagctatgcaggctctgggaaggctcttcttaaagtaacagag
gataacattcgaatgctgttaacctttgctgctacacagccagatcatgagttacttctt
cagaagcacttcactttcttactttcatctgtgtggagggtgacgcatcgtcctgaacat
caacaaaatgtctcatctgctcggaatggtgttcgtttagggggaaggtttctcagtcct
tttcttggccacacacctcagcgttctgcacaggaagcagcacaaaggatgaaattcaca
aacttgcgggagtgtagcaagttgttatcagctgcattgcatgatgcgagcaatagacaa
tggagtgaagcaggtttcctctctgacagagaagattctcaggtgattgaagaaagttta
gagttaacactagaaatccagagggagaatgatgactctatgattccattcccacgggta
atgaatttatcagtatatggccccaatcctgctacatctataaacaagactgctggagaa
gaccatctcaaagcttctagtgttttggccgagaaccgtttcagggccgcaactatggct
ggtgtcgaaggtggtcagcattgggcttcagctgccttcccagctaatgattccaaaaca
cggtcagggtcgaaattgcagtcgttggggaagcacaaactgcctgcatcagacacagcc
agacctaaatcaaaactgaagaaggcctcaacggagcatagcgatgtacctaacttacat
gctgtgcaagtatttcaaccagtatcaacaattgcatcaaaagaccccaacttaagatgt
gacccaacattggtcactaatgatggcagttggaccaatggtgttggcagcaatttctgt
tcgagcatggacgaagcctttccatcggaagtagagagccttgatatagtcccgcacaat
tatacccctggctttatttcaggactcgacgattgttcaatgctcccagactatactgac
attggataa
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