Gossypium raimondii: 105794319
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Entry
105794319 CDS
T04129
Name
(RefSeq) THO complex subunit 2 isoform X2
KO
K12879
THO complex subunit 2
Organism
gra
Gossypium raimondii
Pathway
gra03013
Nucleocytoplasmic transport
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105794319
09122 Translation
03013 Nucleocytoplasmic transport
105794319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105794319
03041 Spliceosome [BR:
gra03041
]
105794319
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
105794319
Spliceosome [BR:
gra03041
]
Complex C
Other components
EJC/TREX
105794319
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105794319
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
ABPF_N
LIM_bind
Motif
Other DBs
NCBI-GeneID:
105794319
NCBI-ProteinID:
XP_012478905
UniProt:
A0A0D2SHJ8
LinkDB
All DBs
Position
3:complement(42187120..42207341)
Genome browser
AA seq
1844 aa
AA seq
DB search
MSLPPIECIYVTEEIIRESKNGNSNFSFSSPVPMLRFLYELSSAMVRGELPFQKCKAVLD
AVEFTERVSEDEFASCFADIVTQMAQDFTMAGECRINLIKLAKWLVESSLVPLRLFQERS
EEEFLSEAEMIKIKAPDLKVKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRGSEDS
TQNSSTARIGIIKSLIGHFDLDPNRVFDIVLECYELQPDNNAFLQLIPIFPKSHASQILG
FKFQFYQRMEVNTPTPFGLYKLTALLVKEEFIDLDSIYAHLLPKDDEAFEHYNGFSAKRL
DEANKIGKINLAAIGKDLMEDEKQGDVRIDLFAALDMENEAVAERSPELENSQTLGLLTG
FLLVDDWYHAHILFDRLSPLNPVAHVRICKGLFRLIEKSISSAYDIVRQTHLQSFVSPLG
IDNVDTRGTTVSNSFIDLPKELFQMLATVGPHLYRDTLLLQKVCRVLRSYYLSALELVTN
ADGASNGEMVTTGHRNPRLHLKEARPRVEETLGACLLPSLQLVPANPAVGQEIWEVMNLL
PYEVRYRLYGEWEKDDERNPTILAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANP
MTVLRTIVHQIEAYKDMITPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDGLNLS
DWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQFTENL
TEEQLDAMAGSETLRYQATSFGVTRNNKALIKSTNRLRDSLLPKDEPKLAIPLLLLIAQH
RSLVVINADATYIKMVSEQFDRCHGTLLQYVEFLCSAVTPAAAYAQLIPSLDDLVHMYHL
DPEVAFLIYRPVMRLFKCQGSHDVFWPLDANGTADITVACSESESKDDSSRVILDLGPPR
KPTMWSELLDTVKTMLPSKAWNSLSPDLYATFWGLTLYDLYVPRNVYESEIAKQHAALKA
LEELPDNSSSAINKRKKDKERIQEALDRLTSELHKHEENVASVRRRLTREKDRWLSSCPD
TLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMI
CCCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFI
KVHWKWSQRITRLVIQCLESTEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKIKND
EREDLKVLATGVAAALAARKSSWVTDEEFGMGYLELKPVPPITSKSVAGNTVAAQNGSSV
NVSQNEAAGGRTVALGTQQSDVNLVKDQVSRTKPDGRLERAENAPLGKSDLKTKGGTSAN
GSDAALSVTLAASQAGIAKSHENQKQPDDSSNKLDKHAARTPAKNSAESELKASSKRSVP
VGSLTKTQKQDPGKDDGKSGKAVGRTSAISVNDRDVPSHTEGRQGGTTNVSSAITSNGKD
DSSEVPDASRPSSRIVHSPKHDSSAAASKSSDKLQKRTSPVEETDRLSKRRKGDVEVKDL
DGEVRVSDRERSADPRSADFDKPGTDEVTSYRTGDKPLDRSKDKGSERHDRDYRDRLERS
EKSRADDILIEKSRDRSIERHGRERSVERSIDRNLDRLGDKAKDERSKDERSKVRYADTS
VEKSHADDRFHGQSLPPPPPLPPHMVPQSVNATGRRDDDPDRRFGSTRHTQRLSPRHEEK
ERRRSEENLLVSQDDGKRRREDDFRERKREEREGLSLKVEERERDRERDREKANVVKEDD
VDATGAKRRKLKREHLPSEPGEYSPVAPPPPPLSIGMSQSYDGRERDRKGTMMQRGGYLE
EPGMRIHGKEATGKMARRDPDPLYDREWDDEKRQRPEQKRRHRK
NT seq
5535 nt
NT seq
+upstream
nt +downstream
nt
atgtctctccctcctatagagtgtatatacgtgacagaggaaatcattcgcgagagcaaa
aatggaaactctaacttctcattctcttcacctgttcctatgcttcgctttctctacgag
ctctcctcggccatggtgcgcggggaattgccattccagaagtgtaaagcggtcttggat
gccgtagagtttacagagagagtgtcggaggatgagtttgcctcctgctttgctgatatc
gtcacgcaaatggctcaagactttacaatggccggagaatgccgcattaatttgataaaa
ttggcaaagtggctggtggagtcttcattagttccattgaggcttttccaggagcggagc
gaagaagagttcctatcggaggctgagatgatcaagataaaggctccagatttgaaggtt
aaagaggtcagggtaaatacacgtcttctttatcaacaaacaaaatttaacctccttcga
gaagagagtgagggctatgctaagctggttactctcctttgtcgaggttctgaagattca
actcaaaattcatcaacagcaagaataggcatcatcaagtcattaattgggcattttgat
ctggaccccaaccgtgtttttgacattgtattggagtgttatgaacttcagccggataat
aatgcttttttgcaattgattcccatctttccaaagtctcatgcttcacaaattctcggt
tttaagtttcaattctatcagcgcatggaagtaaatactcctaccccatttgggctctat
aagcttacagcattgctagtgaaggaagagtttattgatcttgatagcatctatgctcat
ttacttcccaaggatgatgaggcatttgagcattataatggtttctccgcaaaacggctt
gatgaggctaacaaaattggaaaaataaatcttgctgctattggtaaggatctcatggag
gatgagaaacaaggagatgtaaggatagacctttttgctgctttagatatggaaaatgag
gctgtcgctgaaagatctccagagcttgagaatagtcaaactttaggcttgcttactggt
ttccttttggtagatgattggtaccatgcccatatcctctttgatcgcctttcacctctt
aatccagtggcacatgttcgaatctgcaaggggttatttaggctcattgaaaagtcaatc
tcttcagcatatgatattgttcgccagacacatctccaaagctttgtgtctcccttgggt
attgataacgtggatacaagaggtacaacggtcagtaactcctttattgatcttcctaag
gaactctttcagatgctggctactgttggacctcatctttaccgtgatacactactgttg
cagaaggtatgtagagttttgagaagttattatttatctgcccttgagcttgtaactaat
gctgatggagcctcaaatggggaaatggttaccactggacatcgaaatcctcgtcttcac
ttgaaggaagcaagaccaagggtagaggaaactttaggagcgtgtctacttccttctttg
caacttgtacctgcaaatccagctgttgggcaagagatttgggaagtaatgaatctcctt
ccctatgaggtgcgatatcggttatatggcgagtgggaaaaggatgatgagcggaatcct
acaatattagctgcaagacaaactgccaagctggacacaaggaggattttgaaacggttg
gctaaggaaaatttgaagcagttaggtcggatggttgctaaacttgctcatgctaatcca
atgactgtactgcgaaccattgttcaccagattgaggcatacaaggatatgattactccc
gttgttgatgcattcaagtatttgactcagcttgagtatgacattttggaatatgttgtg
attgaacgacttgcacaaggaggacgagataaactaaaggatgatggtctaaatttgtca
gattggcttcaatctttggcatcattttggggacacctgtgcaagaaatacccatcaatg
gaactgagaggtcttttccagtacctggttaatcagttaaaaaagggccaaggaattgaa
cttgttctcctgcaggagcttattcaacaaatggcaaatgtacaattcacagaaaatctg
accgaggagcagttggatgccatggctggaagtgagactcttcgatatcaagccacttca
tttggtgtaactcgaaataataaggcattgatcaaatccaccaataggctcagagattcg
ttgcttccaaaggatgaacctaagttggctattccacttttgttgcttatagcgcaacat
cgttctttggttgtcataaatgcagatgctacttacattaagatggtcagtgagcagttt
gacagatgccatgggactcttcttcagtatgtagaattcctatgtagtgcagtgacacca
gctgctgcttatgctcaattaattccctcacttgatgatcttgttcatatgtaccacctt
gatcctgaggttgcatttttgatatatcgtcctgtgatgaggctcttcaagtgtcaaggc
agtcatgatgttttctggcctttagatgccaatggaactgcagatattactgtggcatgc
tcagagtctgaaagtaaggatgattctagccgagtgatactggacttgggtcctcctcgg
aagcccacaatgtggtctgaacttcttgacactgttaaaaccatgttgccttctaaagcc
tggaatagtctctctcctgacctctatgccactttttgggggcttacactgtatgatctt
tatgttcctagaaatgtttatgagtctgaaattgcaaagcagcatgctgcacttaaggct
cttgaagagcttcccgataattctagttcagcaattaacaaaaggaaaaaagacaaggaa
agaattcaagaagccttagatcgtctaactagtgaacttcataagcacgaggaaaatgtt
gcatctgtccgtaggcgacttactcgtgaaaaggacaggtggttgagttcctgccctgat
actcttaagattaacatggagttcctccagcgttgtatatttcctcgatgtaccttcagc
atgccagatgcggtctattgtgcaatgtttgtccatactctccattctctgggcacacct
tttttcaacacagtgaatcatattgatgttctgatatgcaaaaccttgcaacccatgata
tgctgttgcactgagtatgaagcaggaagactaggaaggtttctgtatgaaacactaaag
attgcatactactggaagagtgacgaatccatctatgagcgggagtgtggaaatatgcca
ggctttgctgtgtattatagatatccaaatagccagcgtgttacatacggacagttcata
aaggtacattggaaatggagccaaagaatcacaaggttagtgatccaatgtttggaatca
accgagtacatggagattcgtaatgctttaataatgctgacaaaaatttctagtgttttc
cctgttaccagaaagagtgggattaacctagaaaaaagggttgcgaaaattaaaaatgat
gaaagagaggatctcaaggtgttggcaacaggtgttgctgctgcattggctgctagaaag
tcttcatgggttactgatgaggaatttggaatgggatatcttgagctgaagcctgtacca
ccaattacttcaaaatctgttgctggtaatacagttgctgcacaaaatggttcatcagtt
aatgtttcccagaatgaggctgctggtggcaggacagttgcccttggaacccaacagtcg
gatgtgaatttggtcaaggaccaggtttcaagaacaaaacctgatgggcgattggaaaga
gcagaaaatgcccctcttggtaaatctgatttgaaaacaaaaggtggtacatcagccaat
ggctctgatgctgcgttatctgttacattagctgcttcacaagctggaatagcaaaatca
catgaaaatcagaaacagccagatgattcttctaataaattggataagcatgcagctaga
actcctgcgaaaaactctgctgaatcagagttaaaggcctcttccaaacgctctgtccct
gttggatctctaacaaagacacagaagcaagatcctggaaaagatgatggcaagtcgggg
aaagctgttggaagaacttctgcaatctctgtcaatgacagagatgttccctctcataca
gagggtagacaaggtgggactacaaatgtttcttcagctatcacttccaatgggaaagat
gatagctctgaagtaccagatgcatcgaggccatcttctcgaattgttcattctcccaag
catgatagttctgctgctgcttctaagtccagtgataagctgcaaaagagaactagtcct
gtggaagagactgatagattaagtaagcgccgtaaaggcgatgttgaagtgaaagatctg
gatggtgaagttcgagtatctgacagggagaggtccgctgaccctcgatcggcagatttt
gataagcctggaactgatgaagtaacaagctacaggactggggataagcctttggataga
tcaaaagataagggaagtgagagacatgatagggattacagagatagattggagcgctct
gaaaagtcccgggcagatgatattttgattgagaagtcgagagatagatcaatagagaga
cacggaagagagcgttctgttgagagaagcattgataggaatttggatagacttggtgat
aaagctaaggatgagcgcagcaaagacgaaagaagtaaagtacgatatgctgatacatcc
gtagaaaagtctcatgctgatgaccggtttcatgggcaaagcttgccgccaccaccacct
ttacctcctcatatggtcccacaatctgttaatgctactggtagaagggatgatgatcca
gacagaaggtttggtagtacaagacacactcaaagactctctccaagacatgaagagaag
gagcggagacggtcagaagaaaatttgttggtttcccaggatgatggaaagcgcagaaga
gaggatgactttcgagagagaaagcgagaggaaagagagggattgtcattgaaggtggaa
gagagggaaagagacagagagagggacagagagaaagcaaatgttgtgaaagaggatgat
gttgatgctactggtgccaaaaggcggaaactcaagagagagcatttgccatcagagccc
ggggaatattctccagttgcccctcctcccccacctctttccattggtatgtcacaatca
tatgatggaagagagagagaccgaaagggtaccatgatgcagcgtgggggttatttggag
gaaccagggatgaggattcatgggaaagaggcaactggcaagatggctcgtcgagaccca
gacccattgtatgatcgggaatgggatgatgagaaaagacagagacctgagcagaagcgg
aggcatcggaagtaa
DBGET
integrated database retrieval system
