Gossypium raimondii: 105794788
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Entry
105794788 CDS
T04129
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105794788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105794788
03012 Translation factors [BR:
gra03012
]
105794788
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105794788
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105794788
Translation factors [BR:
gra03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105794788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
TFIIA
AAA_22
nSTAND3
ATPase
AAA_19
NACHT
Dicer_dimer
RsgA_GTPase
T2SSE
AAA_23
Motif
Other DBs
NCBI-GeneID:
105794788
NCBI-ProteinID:
XP_012479562
UniProt:
A0A0D2RPP7
LinkDB
All DBs
Position
3:complement(55332353..55350997)
Genome browser
AA seq
1217 aa
AA seq
DB search
MPPSYSPHFLPFSSQFLTHTIKPSLFSPTMKDRPPSSYGAVYVPPHHRLISSPNNQDATK
NSSAPAIHSKLRDHQNTPILNAKGTASPPSLPHLQQQQQQRQQQQGTYNNNNGSKNSNNQ
NAQYNSAYCLGISENVSDRQLDLSLQSGTFDEANIEEWKRKLAMLLHDDGKQEFVSREKK
DRRDFEQIAALASRMGLYSHLYSKVAVFSKLPLPNYRFDLDDKRPQREVSLNFGLLKRVN
AYLGEYLSKKSRNKESFSDNCFSRSSSNSSIVTEEGLFEQPEPLASGTAVMEKILLRRSS
LLRDQQQAWQESLEGREMLEFRQSLPAYKEKDTILTAILQNQVVIISGETGCGKTTQIPQ
FILESEIDSARGAFCSIICTQPRRISAISVSERVASERGEKLGESVGYKVRLEGIKGRDT
RLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELKLILM
SATLDAELFSSYFDGAPLIHIPGFTYPVRTHFLENILEMTGYRLTPSNQIDDYGQERMWK
MSKQAPRKRKSQIVSSVEDALRAADFKDFSPQIQESLSCWNPDCIGFNLIEYLLSYICEN
ERPGAVLVFMTGWDDISSLKDKLQAHPVLGDPSRVLLLTCHGSMASSEQKLIFEEPEDGV
RKIVLTTNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWVSKVSTQQRRGRAG
RVQPGECYHLYPRCVYDAFTEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPKL
LAVQNAIEYLKVIGALDENENLTVLGRYLTMLPVEPKLGKILILGAILNCLDPVLTIVAG
LSVRDPFLTPLDKKDLAEAAKLQFSHDHSDHLALVRAYEGWKEAEKDLAGYDYCWKNFLS
AQSMKAIDSLREEFLSLLKDTGLIDGYATSCNGWSYDQHLIRAIICYGLYPGICSVVHNE
KSFSLKTMEDGPVLLYSNSVNARESRIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFG
GSISRGDVDGHLKMLGGYLEFFMQPAIAEKYLSLRREFDELIQNKLLNPQIVLHLHHELI
SAIRLLVSEDQCDGRFVFGRPDLKPSNMPVVPPQRSLISRTESGPGGDNSKSQLQTLVTR
AGYAAPIYKTSQLENNQFQATVEFNGMQIIGQPCNNKKSAEKDAAAEALQWLMSGTRTGH
EYINYMSMFLKKSKRDN
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgcccccctcttactctccgcatttccttcctttctcttcacaatttctcacccacacc
ataaaaccctcactcttttctccgacgatgaaggatcggcctccgtcctcgtacggcgcc
gtctacgtccctccccaccaccgtctcatctcctctcccaacaaccaagatgctaccaag
aactcctccgcccccgcgattcactccaagcttcgcgaccaccaaaacacacccattttg
aacgctaagggcactgcttctcctccttctttgccacacttgcaacagcaacagcagcag
cgacagcaacagcaagggacttataataacaataacggtagtaaaaacagtaataatcaa
aatgcacagtataattcggcttactgtctggggatttccgagaatgtctctgatcgccag
ctggatttgtctttgcaatcgggtacctttgatgaagctaacattgaagagtggaagcga
aagctagccatgcttctacatgatgatgggaaacaggagttcgtatcaagggagaagaag
gacaggcgagactttgagcaaatagcagctttggcaagcagaatgggtttgtatagccat
ctttattccaaagttgctgtcttcagtaagttgcccctgcctaactacagatttgacctg
gatgataagcgtccacagagggaggtgagcttaaattttggtttgttgaagagagtcaat
gcctatcttggagagtacctttctaaaaagtctaggaataaggaaagcttttcggataat
tgtttttcaagatcaagcagtaatagcagtatagttactgaagaaggacttttcgagcag
ccagagccattagcatctggcacagctgttatggagaaaattcttctgcggagaagttcg
ctgctgcgtgatcagcaacaagcgtggcaggagtctcttgaaggaagagaaatgctagaa
ttccgtcaaagtcttcctgcttataaagagaaagataccatattgactgccattttacag
aatcaggttgttattatctcaggtgaaacaggatgtggcaagaccacacaaattccccaa
tttattttagaatctgagatagattctgcgcgcggagctttttgtagcattatatgtacg
caacccaggcgaatatctgctatatctgtttcagaaagagttgcttcagaaagaggagag
aaattgggtgaatctgttggatataaagtacggcttgagggtattaaagggagggatacc
cgtcttctcttttgcacaacaggcattttgttgagaaggctactagttgatagaaattta
aaaggtgtaactcatgtcattgtggatgagattcatgaacgagggatgaatgaagatttc
ctactcattgtccttaaagatctccttcctcgccgcccagaattaaagctgattttgatg
agtgcaactttggatgctgagcttttctcctcgtattttgatggggcacctttaatccac
attccaggttttacgtacccagttcgaacacattttttggagaatattttggaaatgaca
ggttataggttgactccatctaatcaaattgatgattatggacaagaaagaatgtggaaa
atgagtaagcaagccccgagaaagaggaagagccaaattgtctcttctgttgaggatgcg
ctccgggcagctgattttaaggatttcagccctcagattcaggagtctttgtcatgttgg
aatcctgattgtattggttttaatctcatagaatatcttttatcctatatctgtgagaat
gagaggcccggtgcagttctagtctttatgactgggtgggatgacataagttctctgaag
gataagctgcaagctcatccagtccttggagatcctagtcgagttttgctacttacttgc
catggttctatggcgagttctgagcagaagttaatttttgaagagcctgaagatggagtg
aggaaaatagtattaactactaatattgctgagacaagcataacaattaatgatgttgtt
tttgttcttgattgtggaaaggccaaggagacatcgtacgacgcattgaataacactcct
tgtttgctaccatcatgggtttccaaggtttctactcaacaaagaagaggaagagctggc
cgagtgcagcctggagagtgttatcatctctatcctcgatgtgtatatgatgccttcact
gaatatcaattacctgaaattttgagaacacctttgcagtctctttgtctgcaaatcaaa
agtttgaaactcggaagtatatctgaattcctatcaagggcattgcagtcaccaaagtta
ctggcggttcaaaatgccattgaatatttaaaagtcatcggggccttggatgagaatgaa
aatctgactgtgctggggcgttatttgactatgcttccagtggagccaaaacttgggaag
atactcatccttggtgctattcttaattgcctggatcctgtgttgactattgttgctggt
cttagtgttagagatccttttttgacaccattagacaagaaagatcttgcagaggctgca
aagttgcaattttcccatgatcatagtgaccaccttgcacttgtccgggcttacgagggc
tggaaagaagccgagaaagaccttgctggatatgattattgctggaaaaattttctttct
gcacaatcaatgaaggcaattgattctcttagggaggagtttctttcattgctcaaggat
accggtcttattgacggctatgcaactagctgtaatggctggagctatgatcagcatctc
atccgagcaattatttgttatgggctttatcctggaatttgctctgtcgtgcataacgag
aaatcattttcactgaaaactatggaggatggacctgtacttctttactcgaactctgtt
aatgctcgggaatctagaattccgtatccttggctggttttcaatgagaagataaaagtg
aactctgttttcctgcgggattcaacagctgtctctgattcagtgcttctcctgtttggt
ggtagcatctcaagaggagatgttgatggacacttgaagatgttgggagggtatttagaa
tttttcatgcaacctgctatagctgaaaaatatctaagtttaaggagagaatttgatgag
ctgattcaaaataaattactgaatccccaaatagtcctacatcttcatcatgagctcatt
tctgcaatacggttgctggtttctgaggatcagtgtgatggaagatttgtatttggccgt
ccagatcttaaaccatcaaatatgcctgttgttccaccacaacgttctttgatttcaagg
acagagagtggtcccgggggtgataattctaaaagtcagctccaaacactggtcaccagg
gcaggatatgctgcaccaatctacaagacaagtcaattggaaaacaatcagttccaagct
actgttgagttcaatggtatgcaaatcatagggcagccttgcaacaacaagaagagtgca
gaaaaggatgctgcagctgaggctttgcagtggctgatgagtggtacccggacaggccat
gagtatatcaattatatgtcgatgtttctgaagaaaagcaagagggataactga
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integrated database retrieval system
