KEGG   Gossypium raimondii: 105795008
Entry
105795008         CDS       T04129                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.1 isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
gra  Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:gra00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:gra04812]
    105795008
Cytoskeleton proteins [BR:gra04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     105795008
SSDB
Motif
Pfam: Katanin_con80 WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML ANAPC4_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_EIPR1 WDR90_beta-prop_4th eIF2A Beta-prop_Vps41 Beta-prop_IP5PC_F Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_RIG_1st Beta-prop_VPS8 PROPPIN
Other DBs
NCBI-GeneID: 105795008
NCBI-ProteinID: XP_012479886
LinkDB
Position
3:58578459..58587444
AA seq 875 aa
MTTKRAYKLQEFVAHSSSVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS
GIDSVSFDSLEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS
LDTNLKIWDIRKKGCIHTYKGHTRGVNTIRFTPDGRWVVSGGEDNIVKVWDLTAGKLLHD
FKYHEGQIQCLDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETTGVRCLTFSPDGR
TVLCGLHESLKVFSWEPIRCHDGVDVGWSKLSDLNIHEGKLLGCSYNQSCVGVWVVDISR
IEPYAVGNANRVNGHSDPKSSSGGNLSVLNENAAKPSMGRFSVSQNPDPLVKETKSLGRL
SVSQNSDPAKESKTPGNAPGIPQRVNLNTAPKTTQPNSITVPTVAAPKRSSTKASLAISV
PIFNKSDVIPVIVPRNDARLDQAAESRKEVGISGRSVEQAADSRNEVGITGRNLEPSQLT
AESRKEVGIAGKSLEPSQPAAESRKEAGIVGRTLEQGADSRKELGIVGRTMPFSLQSKTN
SFRKFQNFKEDMDQPAISAASETTVSKASEFNSVLDRSIFSAVRGPIQGMSAAERNMRED
RCIGSCKSEPNSTAELPSSYRDENHDAHVQKTHRDTYPLESLKGGRTRPVVLNWEKRGRS
SNYDGPIMSVSPKNASMANMPSVNLYKQRGYPASVEKEMPSASDGDAVADLMEQHDQFIS
SMQSRLAKLQAVHRYWERKDIKGAIGAIEKMADHAVLADVMSIVIEKMDIVTLDICTCLL
PLLSGLLGSDMDRHLSICLDMLLKLVRVFGSMIYSTISASTPVGVDIEAEQRFERCNLCF
IELEKVKRCLPTLTRRGGSVAKSSQELNLALQEVS
NT seq 2628 nt   +upstreamnt  +downstreamnt
atgaccaccaagcgcgcttacaagctacaggaatttgtcgcacactcttcaagtgtgaat
tgcctaaagattggaaggaaatcttcgagggttcttgtgactggtggggaagatcacaag
gttaatctttgggctattggtaaacccaacgccatactgagtttatccggacatactagt
gggatagattccgtgagctttgattctttagaagtcttggtagctgcaggtgctgcaagt
ggtaccatcaaactttgggatttggaggaggcaaaaattgttcggactctgactggtcat
agatccaattgcatctctgtggatttccacccctttggtgagttctttgcatctggttct
cttgatacgaatctcaagatatgggatatcagaaagaaagggtgtatccacacttacaag
ggccatacacgaggagtcaatacaatcaggtttacaccagatggccgatgggttgtatct
ggtggtgaggacaacattgtgaaggtgtgggatttgactgccggaaaactattacacgat
ttcaagtatcatgaaggccaaattcagtgcttagatttccatccccatgagtttctattg
gctacaggttcagctgatcggactgttaaattttgggaccttgaaacctttgaacttatt
ggttcagctgggcctgagaccactggagtccgttgcttgaccttcagtcctgatgggagg
actgtactgtgtgggttgcatgaaagtctgaaggttttctcgtgggaaccaataagatgt
catgatggtgtggatgtgggatggtctaaattgtcagatcttaatattcatgaaggaaaa
cttcttggctgctcatataatcaaagctgtgttggagtatgggttgtagatatctcgcgt
atagagccatatgctgttggtaatgcaaatcgtgtgaatggtcactctgatcccaaatct
agttcaggtggaaacctctccgtactgaatgagaacgcagcaaaacctagtatgggaaga
ttttctgtttcacaaaatcctgatcctttagtgaaggaaacaaaatcccttggaaggttg
tctgtttcacaaaactcagatcctgccaaggagtccaaaaccccaggaaatgcacctggt
atccctcagagggtcaatttaaacactgctccaaagactactcaaccaaattccataact
gttcctactgtagcagctccaaagaggagttctacgaaggctagtttggccatcagtgtt
ccaattttcaacaagtcagatgtcatacctgtgattgtgcctagaaatgatgctaggttg
gatcaggctgctgaatcaagaaaagaagttggaatatctgggagaagtgtggagcaggct
gctgattcaagaaacgaagttggaataactgggagaaatttagagccaagtcaacttact
gctgaatctagaaaagaagttggaatagctgggaagagtttagagccaagccaaccggct
gctgaatctagaaaagaagctggaatagtcgggagaactttggagcagggagctgattcc
aggaaagaacttggtattgttggaagaaccatgccattttctttgcagtcaaagacaaat
agttttcggaagtttcaaaatttcaaggaagacatggaccagccagctatctctgctgcc
tctgaaactacagtttctaaggcttctgaattcaacagtgtgctggacaggagtattttt
tctgctgtaagaggccctattcaaggaatgtctgctgctgaaaggaatatgagggaagat
aggtgcattggctcttgcaagagtgaaccaaactcaacagcagagttgccttcaagctac
cgggatgaaaatcatgatgcacatgtgcaaaaaacacatagagatacatatcctttagaa
agcctaaaaggaggaagaacacgtccagtagtcttaaattgggagaaaagagggagatct
tctaattatgatggacctattatgagtgtctctccgaagaatgcatcaatggcaaacatg
ccttctgtcaatttgtataaacaaagaggataccctgcatctgtggaaaaagaaatgcct
tctgccagtgatggggatgctgttgcagatctaatggagcaacatgatcaattcattagt
tccatgcaatctcgtttagctaaattacaggctgttcatcggtattgggaaagaaaagac
ataaagggggcaattggtgcaattgaaaagatggctgatcatgctgtgcttgctgatgtg
atgagcattgtcattgagaaaatggacatcgtcacattggacatttgcacttgtcttctg
ccacttctgtctggtctccttggtagtgatatggataggcatttgagcatctgtctggac
atgctgcttaagctggtcagggtatttggttccatgatatattcaaccatatctgcttct
acacctgttggtgtagacatcgaggcagaacaaaggtttgagcgttgcaacctctgcttt
atagaactagaaaaagtaaaacgctgtctgcccactcttaccagaagagggggatcagtt
gcaaaatcttcccaggaattgaacctagcacttcaagaagtatcatga

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