Gossypium raimondii: 105795510
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Entry
105795510 CDS
T04129
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X6
KO
K14328
regulator of nonsense transcripts 3
Organism
gra
Gossypium raimondii
Pathway
gra03013
Nucleocytoplasmic transport
gra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105795510
03015 mRNA surveillance pathway
105795510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105795510
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105795510
mRNA cycle factors
P-body specific factors
105795510
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
TMEM156
RRM_2
Motif
Other DBs
NCBI-GeneID:
105795510
NCBI-ProteinID:
XP_012480624
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Position
3:complement(62832397..62838178)
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AA seq
513 aa
AA seq
DB search
MKRTLDRTKVVLRHLPPSITEAMLIEQVDSAFAGRYNWFSFRPGKNRQKHQSCSRLYIDF
KSLEDVLEFAEFFNGHVFVNEKGAQFKTIVEYAPSQCVPTLWAKNDDCEGTIFKDPEYLE
FLEFLAKPVENLPSAEIQLERREAERVGALKDSSIVTPLMDFVRQKRAAKVGSRKSLSNG
KLSRRAGGQSGGIPSSASSKRGSEKRRGSTTMVCIYLYVLRDSLKNASGKDKSTYILVSR
RDEQQLSNRPVILASSVGTEVSEEESGATRITDADKNKVLLLKGKGKEKEISHVAGSILH
QQNFTSPIKTILRSTPTKLNSRRENRIIRGILLNKDSRQSQCAGFQSEQHIETSHLEKER
RPTWHPHANLGLKDACNASDGNVAGNHLHGAKKLERRSRNKDRTDHGVWTLRHSDGSCAS
DESLSSSASQSAQILIDSSEGACGDNKVDFSSVGSWQGKTFASEHNASSKHVSRRVAVAN
GSSAVNDGKPGKRANVYGSHEKQVWVQKSSSGS
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggactttggatcgaaccaaagtggttctccgccacttgccaccgtccattacg
gaggccatgcttatcgaacaagtcgatagtgcctttgctggccgttacaactggttttcc
ttccgtccaggaaagaaccgtcagaagcatcagtcttgttccagactgtacatagacttc
aagagccttgaggatgtcttggagtttgcagagttctttaacggtcatgtgtttgttaat
gagaaaggggcacagtttaaaactattgttgagtatgcaccttcccaatgcgttcccaca
ctctgggctaaaaatgatgattgtgaagggactatattcaaagatcctgagtatttggag
ttccttgaatttcttgcgaagccagtcgagaatcttcctagtgcagagatacaattagag
aggagggaggctgaaagagttggtgcactgaaggattcttccatagttacacctttaatg
gattttgttagacagaaaagagctgctaaggttggatcacggaagtcactgtctaatggg
aaacttagcagaagagctggtggacaatctggtgggattccaagttcagcatcatcaaaa
agaggttctgaaaagaggcggggttctactacaatggtatgcatatatttgtatgttcta
agggatagcttgaaaaatgcaagtggcaaagacaaatcgacatacattctggtttctaga
agggatgagcagcaactttccaataggcctgttattttggcatcatctgtgggaactgaa
gtatctgaagaggaaagtggagctactagaattactgatgctgataaaaataaagttctg
cttctgaaagggaaagggaaagagaaagaaatttctcatgtggctggaagtatattgcat
caacagaattttacatctccaattaaaacaatacttcgttcaactcctaccaaactgaac
tcacgacgcgaaaacagaataatcagaggcatactgttaaacaaggattctcgtcaaagt
cagtgtgccggcttccagtcagagcagcatattgagacctcacatttggaaaaagagaga
cgacctacttggcatccacatgcaaatttaggtttgaaggatgcatgcaatgcttcagat
ggtaacgttgctgggaatcacttgcatggtgctaagaagctagaaagacgtagcagaaac
aaagatagaacagatcatggtgtttggacccttcgccattctgatggatcatgtgctagt
gatgagtccttgtcatcatctgcttctcaatctgcgcagatacttatagattcttcagaa
ggggcttgtggtgataataaagttgatttctcaagtgttgggagctggcaaggtaaaact
tttgcaagtgaacataatgcatccagtaagcacgtcagccgtcgtgtagcagttgccaat
ggatcatctgctgtgaatgatgggaaaccagggaaaagagccaatgtgtatggttctcat
gagaaacaagtatgggtacagaaatctagttctggttcttag
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