Gossypium raimondii: 105796947
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Entry
105796947 CDS
T04129
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
gra
Gossypium raimondii
Pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105796947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gra03041
]
105796947
03009 Ribosome biogenesis [BR:
gra03009
]
105796947
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105796947
Spliceosome [BR:
gra03041
]
Complex A
U1 snRNP components
U1 related factors
105796947
Complex B
105796947
Ribosome biogenesis [BR:
gra03009
]
Eukaryotic type
Pre-60S particles
Helicases
105796947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Motif
Other DBs
NCBI-GeneID:
105796947
NCBI-ProteinID:
XP_012482266
UniProt:
A0A0D2SC36
LinkDB
All DBs
Position
3:complement(7570882..7579017)
Genome browser
AA seq
1154 aa
AA seq
DB search
MTTAEAAAANLGPRYAPDDPTLPKPWKGLIDGTTGLLYYWNPENNVTQYERPTILPPPLP
PGPPPAVSTPKLTPISVAHSAQPNGAVAQMSQVQVVQGAKQLGQQMSQLAQQQGQIVGQQ
QGSMVAQVTDQQGAQQPGPQMGQQGQFIPQQHRPQAMQHPNQQMVSQIGQQTMQHQNSQM
AQPQGQQYAHQHLQYMAYQQSVLPQGQQSSQQLAPHGAQHQGQQYPNREDYKAAVPKKED
VDFQLGNQTGFSPAQFQQMGTSSQNHSAGTNSVQTPPAGLYSGQQQQFTGSSVNMQQPTS
MTHSQQTGTDLVQRQQGHRFQNQMGPSVLQASMPPPGLNTGYEDKLHGRSGNDYYFSGSK
DGQMMGPQQPSLSAIPMETRMSGLPHQNVLGHGGGFNAIGGHAVHNMYGHAGPPYPNNAL
MRPPFVASADANHLSPADAYRKQHEVTATGDNVPAPFIRFEDTGFPPEILREIHSAGFSS
PTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFMLLRQRHNNPLNGPTVLVLAPTR
ELATQIQEEAIKFGRSSRVSCTCLYGGAPKANQLKELDRGADIVVATPGRLNDILEMKKI
EFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNP
VQVNIGSVDELAANKSITQYVEVVPQMEKERRLEQILQAQERGSKVIIFCSTKRLCDQLA
RSLGRNFGAVAFHGDKSQNERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINFDFP
TGIEDYVHRIGRTGRAGATGVSFTFFSEQDWKYAPDLIQVLERANQHVPPEVREIASRGG
PGFGKDRGGMNRFNSPSGSGGRWDSGGRGGMRDGGFGGRGGMRDGGFGGRGGMRDGFGGR
GGMRDSGFGGPGGRGDPFSGRGNRGGRGFGGPAGGHVGWGRNERSLHDQYNNFDGRGRGR
GRGRGRFDNRRGIGDRSRGRSYSRSPDMVRTWRRSRSRSRSRSGSRSWSRSSRSRSRSRS
RSRSWSRGRSRSYSRSPGRGRSRSHSHGRRSRSRSHSYERKDVAKRAFDSPPASNEHNLQ
QKDVAKRAFDSPPPPNKQNLEQKDVAKQAFDSPGAQGNSVPENNSIEPLQTVGISELPQG
EEGAGKVHESVTEP
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgacgactgcagaagcagcagcagccaatcttggcccgcggtatgcaccggatgatcct
actcttccgaaaccttggaaggggctgattgatggaacaactggcctcctttattactgg
aatcctgagaacaatgtcacccaatacgaaaggccaaccattttgcctccacccctgcca
ccgggacctcctcctgcagtttccacacctaagctaactccaatttctgttgcccactcc
gcacaacctaatggtgcggtggcacagatgagccaggtgcaagttgtccagggtgcaaaa
cagctggggcagcaaatgagccaattagctcaacagcaaggacaaatagttgggcagcaa
cagggttcaatggtagctcaggttacggatcagcagggtgcacaacaaccaggtccacaa
atgggacagcaggggcagtttatcccgcagcaacataggccacaggcaatgcagcaccca
aatcagcaaatggtgtctcaaattgggcagcagacaatgcagcatcaaaactcacaaatg
gcacaaccacaaggacaacaatatgcacatcagcatttgcagtatatggcatatcaacaa
agtgtgcttccacagggccaacaaagttctcagcagctcgctcctcatggtgcacaacac
cagggtcagcagtatccaaatcgagaagattataaagcagcagttccgaaaaaggaggat
gttgattttcagctagggaaccaaactgggttttctcctgctcaatttcaacagatgggc
acatcttctcagaaccactctgctggaactaattcagttcagactccaccggcaggttta
tattcaggtcaacaacagcagtttacaggctcctctgtcaatatgcaacagccaacctct
atgactcattcacagcaaactggaacagatttggttcagcggcagcagggtcataggttt
cagaatcagatgggcccatccgttttacaggctagtatgcctcctcctggtttaaatact
ggttatgaagataaactacacggcagatctggaaatgattactactttagtggtagcaaa
gatgggcaaatgatgggtccacagcagccatctctttctgctatacccatggagacaagg
atgagtggtctgccacatcaaaatgtgcttggtcatggtgggggatttaatgctattgga
ggtcatgcggtgcataacatgtatggtcatgctggtccaccttatcccaataatgccttg
atgaggcctccatttgttgcatctgcagatgctaatcatctgtctccagctgatgcatat
cgtaagcagcatgaagtcacagcaacgggagacaacgttccagcaccattcataagattt
gaagatactggtttccctccagagatactgagagagattcattctgctggtttttcctct
cccactccaatacaagcacaaacatggcccattgcactacaaagtcgggacattgtggct
attgctaaaactggttctggtaaaacattgggctacttgattcccgctttcatgcttttg
aggcaacggcataacaaccctctgaatggcccaacagtgttggttttggctccaactcgc
gagcttgctacacaaatacaggaagaggccataaaatttggccgatcttcaagagtctct
tgcacgtgtttgtatggtggggctccaaaggctaatcaattgaaagagttagatcgagga
gctgatattgtagtggcaactcctggtcggctaaatgacatccttgaaatgaagaaaatt
gagtttggacaggtgtcactccttgttcttgatgaagcagatcgaatgcttgacatgggt
tttgagccccagattcgcaagattgttaatgagatacctcctcgcagacaaactctgatg
tacactgcaacatggcccaaggaggttagaaaaatagcaggtgacctccttgtcaatcct
gtccaggtgaacattggcagtgttgatgagcttgctgccaataagtctatcacccagtat
gttgaggttgttccccagatggagaaggagaggcgcctggagcagattctccaagctcaa
gagcgcggttcaaaggttattattttttgctccactaagaggttgtgtgaccagcttgct
cgtagtcttggacgcaactttggagctgttgctttccatggagataaatctcaaaatgaa
agggactgggtgttgagtcagttccgaactgggaaatcccccatattggttgccactgat
gttgctgctcgtgggcttgacatcaaagatataagggtggttatcaattttgatttccct
accggcattgaggactatgttcaccgaattggaaggactggaagagctggtgcaactggg
gtgtcgttcacctttttctctgagcaggactggaagtatgcccctgacttgattcaagtt
ctggagagagctaaccagcatgtgcctcctgaggtgcgagagatagcttctcgtggtggg
cctggttttgggaaggatcgaggtggaatgaatagatttaattctcctagtggtagtggt
gggcgttgggattctggaggccgtggtggaatgagggatggaggctttggtggccgtggt
ggaatgagggatgggggctttggtgggcgtggtggcatgagagatggttttggcggtcgt
ggtggtatgagggatagtggctttggtggtcctggagggagaggtgacccattttctgga
cgtggaaaccgaggaggacgtggatttggtggccctgctggtggtcatgttggttggggc
aggaatgagagaagcttgcatgatcaatataataattttgacgggcgaggacgtggtcgt
ggacgaggacggggacgatttgataacagaagaggcattggtgatagaagtagaggcaga
agctatagccgaagtcctgacatggttcgaacttggcgccgtagccgtagccgtagccgt
agccgcagtgggagtcggagttggagtaggagtagtaggagtaggagtcgaagcagaagc
agaagcaggagctggtcacgtggtcgtagccgcagctacagccgtagtcctggtcgaggg
cggagccgaagccatagccatggccgccgcagtcgaagccgtagtcacagctatgagcgg
aaggatgttgcaaagcgggcatttgattctcctcctgcttccaacgaacataacttgcaa
cagaaggatgttgcgaagcgagcatttgattctcctcctcctcccaacaaacagaactta
gagcagaaggatgttgcaaagcaggcatttgattcacctggtgcacaaggcaattcagtg
ccagaaaataattctatagaaccgttacaaacagtcggaatttctgagctacctcaagga
gaggagggtgcaggcaaagtgcatgaatcagtgactgagccataa
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integrated database retrieval system
