Gossypium raimondii: 105798125
Help
Entry
105798125 CDS
T04129
Name
(RefSeq) sister chromatid cohesion protein SCC2 isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gra03036
]
105798125
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
105798125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
Cnd1
PHD_2
zf-PHD-like
Porphobil_deam
Motif
Other DBs
NCBI-GeneID:
105798125
NCBI-ProteinID:
XP_012483499
LinkDB
All DBs
Position
9:2425155..2436919
Genome browser
AA seq
1824 aa
AA seq
DB search
MSNPSSSSWVSDQPGQRLMDMAHCGIGLTNTIHSEVAQCLPLPSLPVFCGASDLELRLFD
DPAVGASRSLNRPQIIAQASRIADLLRETDVSYLNLRDEADSVSHDHLEPLELHAQVLQY
NPAAFEYVTPGLVKGKNSGGAVFERKPSESSAPLIGQFQRETRGNRNQQTDVVANDMPKS
SSKKPKIKKKADDTGSSVLPDPSELQDAIIGNFRELLEDFCSRAQIPTDDRDEMEWLSLP
VNDVRMLVNEIMSVRAKRLLHLVPVDILVKLLRVLDHQIHRAEGLSIDECEHQDSDVFSL
VFCALESIHASLAIMAHNDMPKQLYHEEIIERILEFSRHQITDVMSAYDPSYRALHKPSE
NGAVEDDDDEEPDAELGSASKKRRSTKTAKAKKSAMNKVSGAVNAILQKLCTILGLLKDL
LLIEKLSDSCVLQLLKTSFTTFLVDNIQLLQLKAIGLLTGIFYSYTQHRTYIIDEMVQLL
WKLPVSKRALRAYHLPDEEQRQIQMITALLIQLVHSSANLPEALNQTSIGSPILEVSVDA
GYLTKCHESVQDTCCHFWTRVLQRLASVKTQEASELKLMIENLVTDLLTTLNLPEYPAAA
PILEVLCVLLLQNAGLKSKDTSVRAMAIDLLGTIAARLKHDALLNRKDKFWISEELLSGD
DTDRSYPKGACSICFDGKEEKVLYRCQGCQRFFHSDCMGVREQEGPNRSWYCQFCMCKKQ
LLVLQSYCESQYKDDEKPKRGRSESSKSSDPITKVEIVQQMLLNHLQDAASADDAHLFVR
WCYLCLWYKDGPKSQQNFNYYVSRLRSKAIVRDSGTVSSLFLRDSVKKIALALGQNNSFS
RGFDKILYLLLVSLRENSPVIRAKALRAVSIIVEVDPEVLGDKRVQVAVEGRFCDSAISV
REAALELVGRHIASHPDVSLKYFEKVAERIKDTGVSVRKRAIKIIRDMCNADPNFSGFTN
ACIEIISRVSDDESSIQDLVCKTFYEFWFEEPSGMQTQYPGDGSSIPLEVAKKTEQIVET
LRQLPNHQFLVTVIKRNLVLDFFPQSAKAAGINPVSLAAVRRRCEVMCKCLLERILQTEE
TSNVEAEVPTLPYVLALHAFCVVDPSLCMPASDPSQFVITLQPYLKSQVDNRVGAQLLES
IIFVIDAVVPLMRKLPPSVGDELKQDLKHMIVRHSFLTVVHACIKCLCSVSRKAGNTGDV
VEYLIQLFFKLLDSRATDNKQQVGRSLFCLGLLIRYGNSLFGGSSSKNIDVASSISLFKK
YLQMDDFSIKVRSLQALGFALIARPEYMLEKDIGKILEAALAASSNVRLKMQMLQNLLEY
LLDAESQMETDKASDDQVQYTVEGGHSVPVAAGAGDTNICGGIVQLYWDNILGRCLDFNE
EVRQSALKIVEVVLRQGLVHPITCVPCLIALETDPLDVNQKLAHHLLMNMNEKYPAFFES
RLGDGLQLSFIFMRSISGNAHENPNEKSQSKLPGNLKGKSDAGSLTQARLGVSRIYKLIR
GNRVARNKFMSSIVRKFDTPIWNDSVIPFLMYCTETLALLPFSSPDEPLYLIYTINRVIQ
VRAGALEANLKTLSSNLLQTDAQMMTSNNGIVQPDYSQAAYNHMATLDLNGTFQEPPVVQ
PPFFHMTSIDLNGTIQQNFSYQSISHYPPAIETTMHKMAPSEPRALSKDEIQKIQADVLA
ATALQLLMKLKRHLKIVYSLNDQRCQAFSPTEPIKPGDVLTRQNVPFDISETQTTLPSTY
QELVQRYQEYKNALREDAIDYSTFTANIKRKRPTPRKGGKAVRTNGGGDEDDDYDEEWTG
GSGVRRMSNSGRKSYNIRSSSRQR
NT seq
5475 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatccaagtagctcgtcctgggtctcggatcaaccggggcagaggttaatggac
atggcccactgtggtatcggcttgaccaacaccatccactccgaggtggcgcagtgcttg
ccgcttccttcgttgcctgttttctgtggtgcttcggatctggagctccggctgtttgac
gacccggctgttggagcttccaggtctttgaaccgacctcaaattatagctcaggctagt
cgaattgctgatctgcttcgcgaaactgacgtttcatatctgaatcttagggatgaggca
gattcagtttcgcatgaccatttggagcccttggaacttcatgcacaagttctccaatac
aaccctgcagcatttgagtatgttacccctggtcttgtcaaggggaaaaactctggtggc
gctgtgtttgaaaggaagccatctgagtcaagtgctcctcttattggtcaattccaaaga
gagactcgcggcaatcgcaatcagcagactgatgttgttgctaatgatatgccaaaatcg
tcttccaagaagccaaaaataaagaaaaaggctgatgacactgggtcatcagttctacca
gatccttcagagcttcaagatgctataattgggaacttccgtgagctgctagaagacttc
tgcagcagagctcaaattcctactgatgatagggatgagatggagtggttatcattgcca
gttaatgatgttagaatgcttgtaaatgaaattatgtcagtacgtgcaaagagacttcta
catttggttcctgtagatattcttgtgaaattgttacgggttctagatcatcagatacat
cgggcagaaggcttgtctattgatgaatgtgaacatcaagactcagatgtattctcatta
gtattctgtgccctggagtccattcatgcttctttggcaataatggcacataatgacatg
ccaaagcaattataccatgaagagattattgaaaggattttagaattctctaggcaccag
ataacagatgttatgtcagcttatgacccatcatatcgtgccttgcataaaccaagtgaa
aatggagcagttgaagatgatgatgatgaggagcctgatgctgaactggggtctgctagc
aagaaaagacgcagtaccaagactgctaaagcaaagaaatcagcgatgaataaggtctct
ggtgctgtgaatgctatactacaaaagctctgcactattcttggtttactcaaagacttg
ttattgattgagaagttatctgatagttgtgttctacaactattaaagacaagctttact
acttttttggtggacaacattcagctcttgcaactcaaagcaattggcttgctaactggg
atattctactcatatacccaacatagaacatatataatagatgaaatggttcagcttctc
tggaagttgcctgtttcaaagcgagcattaagagcgtatcacctacctgatgaagaacag
aggcagatccagatgattacagctttgctgattcagttggttcatagcagtgctaacctt
cctgaagctttaaatcaaacatcaattggaagtcccatcttggaagtgtcagttgatgct
ggttatttaactaaatgccatgaatccgttcaggatacatgttgtcatttctggactcgt
gtccttcaacgtcttgcttctgtaaagactcaagaggcctctgagttgaaactgatgatt
gagaatcttgtcactgatttactgacaacattaaatctacctgaataccctgctgctgct
cctattttagaggttctttgtgttttactgctccaaaatgcaggtctgaaatctaaggat
acctctgttcgtgcaatggcaattgatcttctaggcacaatagcagcaaggttgaagcat
gatgctctcctcaataggaaggacaagttctggatatcggaagaattgcttagtggggat
gatactgatcgtagttacccaaaaggtgcatgttctatttgttttgatggaaaggaagag
aaagtgttatataggtgtcaaggttgtcaaagatttttccacagtgattgtatgggggta
agagaacaagaaggtcctaaccgtagttggtactgccagttttgcatgtgtaagaagcag
cttcttgtattgcaatcatactgtgaatcgcagtacaaggatgatgagaaaccgaaacgt
ggtcgctcagaaagttctaaatcttctgatccaattacgaaagttgaaattgttcagcag
atgcttttgaatcatcttcaagatgctgcttctgctgatgatgcccatctttttgttcga
tggtgttatctttgcttatggtataaagacggcccaaaatctcaacaaaatttcaattac
tatgtttctagactgagatcaaaagcaatagtgcgtgattcggggactgtttcttcactg
tttttaagggattcagtcaagaaaattgctttagcactgggacaaaataattctttctct
agaggatttgacaagattctttacttgcttctggttagcttaagagaaaactcccctgtt
attagggccaaggctttacgagcagttagtattattgtagaagtcgatccagaggtatta
ggtgacaaacgtgttcaagtggctgttgagggaaggttttgtgactctgcaatatctgtc
agggaagctgcattggaactagttggcaggcacattgcttcacatccagatgttagttta
aagtactttgagaaggtagcagagaggattaaagatactggagtcagtgtacggaaacga
gcaatcaaaattattcgagatatgtgcaatgcggatcctaacttctcagggtttacaaat
gcttgcattgagattatttctcgtgttagtgacgatgaatcaagtattcaggatcttgtt
tgtaagacattttatgagttctggtttgaagaaccatctggaatgcagactcagtatcct
ggagatggtagttccattccgttggaggtggctaagaagactgagcagattgttgaaaca
ctgaggcagttgcctaatcatcagtttcttgtaactgtcattaaacgtaacttggtcctt
gattttttccctcaatcagcgaaagctgctggaatcaaccctgtctcccttgctgcggta
cgcaggcgatgtgaagtgatgtgcaagtgcttattggaaagaatattgcagacagaagaa
acaagtaatgtggaagcagaagttcctacactcccctatgtgttggccttgcacgcattt
tgtgttgtggacccatcactttgcatgccagcttcagatccttcccaatttgttatcaca
ctacagccttaccttaagagtcaggttgataacagagttggtgcacagttactggagagt
ataatctttgtaattgatgccgttgtgccgttgatgcgaaagttgcctcctagtgttggt
gatgaactaaaacaagatctgaagcacatgatcgtccggcattcttttttgactgttgtc
cacgcttgcatcaagtgtctttgttcagtgagtagaaaggcagggaatactggcgatgtt
gttgagtatctcattcagttatttttcaaattattggattcccgggcaactgataacaag
cagcaagtggggcgctctctcttctgtcttggattgcttatccgctacggaaactctttg
tttggtggttctagtagcaaaaatatcgatgttgctagcagtattagtttgtttaaaaag
taccttcaaatggatgattttagcataaaggttagatctttgcaggcattaggttttgct
ctaattgctagacctgaatatatgttggaaaaggacattggaaagattttagaggcagca
ttagcagcgagttctaatgttcgtcttaagatgcaaatgttacaaaatttgttggaatat
cttcttgatgcggaaagtcaaatggaaacggataaagcgagtgatgatcaagttcagtat
actgtagaaggtggccacagtgtacctgtagccgcaggtgctggcgatactaacatttgt
gggggtatagtccagctgtactgggataatattctggggagatgcctggactttaacgaa
gaagttcgccaatctgccctaaagatagtggaagtagttcttcgacaaggtcttgttcat
cctattacttgtgtcccatgccttatagccctagaaacggatcctctggacgtcaaccaa
aagttggctcatcatttgctaatgaatatgaatgagaaatatcctgcttttttcgagagc
cgactgggggatgggcttcagctgtcatttatcttcatgcgctcaattagtggcaatgca
catgaaaatcctaatgaaaaatcccaatcaaagcttcctggaaatttgaaagggaaatct
gatgctgggtctttaacacaagcaaggttgggagtttctagaatttacaagctcattcgt
ggaaatcgggttgctaggaacaaattcatgtcctcaattgtgcgcaaatttgatactcct
atctggaatgattccgttatacctttcttgatgtattgtacggaaactcttgctttgtta
ccattttcatctccggatgaaccactttatttgatctacaccataaatcgagtgatacaa
gtcagagcaggggctcttgaggcaaatttgaaaaccttgagttcaaatttactgcaaaca
gatgctcagatgatgactagtaataacgggatagttcagccggattatagtcaagctgct
tataatcatatggctacgcttgatttgaacggaacatttcaggagccgcctgtggttcag
cctcctttctttcacatgacatcaatcgatttgaatggtacaatccaacaaaacttcagt
tatcagtctatttcacattatcctcctgcaatcgagacaacaatgcataagatggcccct
tctgaacctcgtgctctttccaaagatgaaattcaaaaaatccaggctgacgttcttgcc
gctactgcattacagcttcttatgaagctaaaaagacatctaaaaattgtttatagcctg
aacgatcaaagatgccaggccttttctccaactgaacccataaaaccgggggatgttcta
acgaggcagaacgttccctttgacatcagtgaaacacagacaaccttgcctagcacctat
caagaattggtgcagagatatcaggaatacaaaaacgcgttgagggaagatgcaatcgat
tactcaacattcacagccaatatcaaaaggaagcgaccaactccgaggaaaggaggaaaa
gcggtgcgaacgaacggtggtggggatgaagacgatgattacgatgaagagtggacaggt
gggagtggtgttcgtcggatgagtaacagcggacggaaaagttacaacataagaagcagc
agtcggcagcgatag
DBGET
integrated database retrieval system
