Gossypium raimondii: 105798147
Help
Entry
105798147 CDS
T04129
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
gra
Gossypium raimondii
Pathway
gra04120
Ubiquitin mediated proteolysis
gra04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
105798147
04120 Ubiquitin mediated proteolysis
105798147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gra04121
]
105798147
Enzymes [BR:
gra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105798147
Ubiquitin system [BR:
gra04121
]
Ubiquitin ligases (E3)
U-box type E3
105798147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
105798147
NCBI-ProteinID:
XP_012483539
UniProt:
A0A0D2RVN1
LinkDB
All DBs
Position
9:complement(2814140..2820707)
Genome browser
AA seq
1053 aa
AA seq
DB search
MATQKPQRTPEEIEDMILRKIFLVTLKENPENPSSSSSDPRVVYLEMTAAEILSEGKSLL
LSRDLMERVLIDRLSGEFPNSEPPFNYLIGCYKRAHEEIKKISNMKDKTLRSGMESAAKQ
AKKLAVSYARIHLGNPDLFSNGNLKDSNPKAGSSLSSSSPLFPLVFAEVSSGVMLDGFGG
NDFGSRVDCPPGFLEDFFKDSDFDTLDPILKGLYEDLRGSVLKVSALGNFQQPLRALLYL
VKFPVGAKSLVNHPWWIPKGVYLNGRVIEMTSILGPFFHVSALPDHTIFKSQPDVGQQCF
SDASTRRAADLLSSFTTIKTLMNTLYDGLAEVLLCLLKNTETRDSVLEYLAEVINKNASR
AHIQVDPISCASSGMFVNLSAVMLRLSEPFLDANLTKRDKIDPTYVFYCSRLDLRGLTAL
HATSEEVAEWIDKDNPVKTDGSGLNNDGENSLRQLQEASSSGSTPNVKPTRSSSEKAKYP
FICECFFMTARVLNLGLLKAFSDFKHLVQDISRSEDTLATLKAMQGQAPSPQLELDISRL
EKEIELYSQEKFCYEAQILRDGALIQQALSFYRLMVVWLVGLVGGFKMPLPPTCPMEFAS
MPEHFVEDAMELLIFASRIPKALDGVHSYVLDDFMKFIIMFMASPQFIKNPYLRAKMVEV
LNCWMPRRSGSSATSTLFEVHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAE
LLEYLWQVPSHRNAWKQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMS
NTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVER
VANMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKELLKQIVRIYVHLARGDAKNIFPSAIS
SDGRSYNEQLFSAAADVLRRIGEDGRIIQDFIELGAKAKAAASEAMDTEAALGDIPDEFL
DPIQYTLMKDPVILPSSRITIDRPVIQRHLLSDSTDPFNRSHLTSEMLIPNTELKARIEE
FIRSQELKKHGEGLNMQSSKGTIQPTSGEMLID
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggctacgcaaaaaccccaaagaaccccagaagaaatagaagatatgatcctaaggaag
atcttccttgtaacccttaaagagaacccagagaacccatcatcatcttcttctgatcca
agggttgtttacctagagatgaccgcagctgagatcttaagtgaaggcaaaagtctttta
ctttcacgtgatctaatggaaagggttttaattgatcgtctgtctggtgaattccctaat
tcagaacccccttttaattatctcattggttgttataagcgagctcatgaagaaatcaag
aagatttccaacatgaaagacaagacgctgcgttctgggatggaatctgctgctaaacag
gctaagaagttggctgtttcatatgctaggattcatctgggaaatcctgatttgttttct
aatgggaatttaaaagatagtaaccccaaagccggttcttctttgtcttccagttcccct
ttgtttcccttagtttttgctgaagtttcaagtggagtaatgcttgatgggtttggaggg
aatgattttggaagtcgggtggattgtccacctgggtttttggaagacttctttaaggat
tcagattttgatactttggaccctatcttaaaaggtttgtatgaggatttaagagggagt
gttttgaaagtttcagctttgggaaattttcagcaacctttgagggctttgttgtatttg
gttaagttccctgttggtgctaaaagcttggttaatcatccatggtggattcctaaagga
gtttacttgaatggacgtgtcatcgaaatgactagcattttgggcccctttttccatgtt
agtgctctgcctgatcataccattttcaagagccagcctgatgttggccagcagtgcttc
tcagatgcatcaactagacgagcagctgacttgttatcttcattcaccacaataaagact
ctcatgaatactttatatgatggtctggctgaagttcttctttgtctccttaaaaacact
gagactcgtgacagtgtcctcgagtatcttgcagaagtcatcaataaaaatgcatcaagg
gcccatatacaggtggatcctatatcttgtgcaagttctggcatgtttgtcaatctcagt
gctgttatgctccgactttcagagccatttttggatgcaaatttaacaaaaagagataaa
atcgatccaacctatgtcttctactgtagccgtttggatttgagggggttaactgctctg
cacgcaacatcagaagaagtggctgaatggatcgataaagataatcctgtgaaaactgac
gggagtggactaaataatgatggtgaaaatagtttgcggcaattgcaagaagcatctagt
tcgggaagtaccccaaatgtgaagccaacccgaagtagtagtgaaaaagctaaatatcct
ttcatttgtgaatgcttctttatgactgctagggtactcaacttgggcctcctaaaggca
ttttcggactttaagcatctagtccaggacatttcaagaagtgaagacacacttgccacc
ttaaaagccatgcaaggacaggcaccttctccacaactggagcttgatatatcgaggctt
gagaaggaaattgaattgtattcacaggaaaaattctgttacgaggctcaaattttgagg
gatggggcacttattcaacaagcactttcgttctatcgactaatggtggtttggttagtt
ggcttggttggtgggtttaaaatgcctctgccacctacatgtccgatggaatttgcttcg
atgccagagcactttgtggaagatgctatggaactattaatatttgcttctcggattccg
aaagctcttgatggagttcattcatatgtactggatgattttatgaaatttattattatg
tttatggcaagtccgcaatttatcaagaacccctatctcagagcaaaaatggttgaagtt
ttgaactgttggatgccgcgtagaagtggttcatctgcgacatcgacactatttgaagtg
catcaactgtctttggaatatctcgtgcggaatcttttgaagctatatgttgacattgaa
ttcacaggttctcacacacagttctatgataagttcaacatccgccataatattgctgaa
cttcttgaatatctttggcaagttcctagtcaccgtaatgcttggaaacagattgcgaag
gaagaagaaaagggtgtttatctgaatttcttgaatttcctgattaacgatagcatctac
ctcctcgatgaaagtcttaacaaaattcttgaactcaaagagcttgaggctgagatgtca
aatactgcagaatgggaacgcaggcccgctcaggagaggcaagagagaactcgactgttc
cactcccaggagaatattatacggattgacatgaagttggcaaatgaggatgttagtatg
ctggcttttacatctgagcagattacagctccttttctactccctgagatggttgagaga
gtggcgaatatgttaaattactttttattgcaattagttggccctcaaagaaagtcactc
actctgaaagatcccgaaaagtatgaattccgtccgaaagagttgctcaagcagattgtc
cgcatatacgttcatctggcaaggggtgatgccaaaaacatatttccatctgccatctcc
agtgatggtcgatcctataatgaacagttgtttagtgctgcagctgatgttcttcgaaga
attggtgaggatgggaggataatacaagattttatcgagcttggtgcaaaggccaaggct
gcggcttcagaggccatggacactgaagctgcccttggagatattcccgacgaattcctc
gatccaattcaatatacattgatgaaggatccggtgatcttaccatcttcaagaatcaca
atagacagacctgttatccaaagacatcttctaagtgatagtactgatccattcaaccga
tctcatcttacctcggagatgttgattccgaacaccgaactgaaggcaagaattgaagag
tttattaggtcccaggagctgaagaagcatggagaaggcttgaacatgcaaagctctaaa
ggaacaatacaaccaacaagtggagaaatgttaattgattag
DBGET
integrated database retrieval system
