Gossypium raimondii: 105798253
Help
Entry
105798253 CDS
T04129
Name
(RefSeq) probable polygalacturonase At1g80170 isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
gra
Gossypium raimondii
Pathway
gra00040
Pentose and glucuronate interconversions
gra01100
Metabolic pathways
Module
gra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
105798253
Enzymes [BR:
gra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
105798253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
DUF3316
Motif
Other DBs
NCBI-GeneID:
105798253
NCBI-ProteinID:
XP_012483703
UniProt:
A0A0D2NKP8
LinkDB
All DBs
Position
9:complement(6312624..6315775)
Genome browser
AA seq
430 aa
AA seq
DB search
MATSKILLLLLLIQCIVFIGSSRQLKNTNINIDNTFNVINFGAIGDGQKDDSKMFKHAWD
AACDSSAPSPTFLVPRGKTYLLQPLTFNGKHCNSNNITLQVDGRIIAPTKPSAWECETNC
NHWIGFENFDGLHIQGSGTINGQGDKWWKLSCKDNEKSCQHRKPTGFMIGHSKNVDIKGL
TFEDSPQMHIAFESSTLIHATELTIRAPGHSPNTDGIHIQRSTNVSIDNSTIQTGDDCIS
IGNESKYINISNIECGPGHGISIGSLGIMGKTEEVEFVHVRNVTFHGTTNGVRIKTWQGG
HGHARNIKFEDITSHSSTRPTVIDQYYCPHKQCKNQTSAVEISNIAYENINGTSPKEIAV
QLSFSESVPCKNITMKDINLIYEKHKDKTSSYCLNARGLRNGSIQVYLVYKKKIIFRLFF
FINKFIVYCL
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggcaacttcgaaaatcttgttgttacttcttttgatccaatgcattgtattcattggc
tcttctcgtcagttgaagaacaccaacataaatatcgacaatacatttaatgtgattaac
tttggagctattggagatggacagaaagatgattctaagatgtttaagcatgcctgggat
gctgcttgtgattcttcagctccatcaccgacctttcttgtacctcgagggaagacgtat
ctgctgcaacctttaactttcaatggcaaacattgcaactctaataacattactttgcag
gttgatgggagaatcatagccccaaccaaaccttctgcttgggagtgtgaaacaaattgt
aaccattggattggctttgaaaatttcgatggtctgcacattcaaggatctggtaccatc
aatggccagggagataaatggtggaaactttcttgcaaagataacgaaaagtcctgtcaa
catcggaaaccaacgggattcatgataggacactccaagaatgtagatatcaaaggttta
acctttgaagacagtccacaaatgcacattgcattcgaaagctctactttgattcatgcc
actgaacttacaatccgagctccgggacacagtcccaacactgacggaattcacatccaa
cgttccaccaatgtctctatagataattcaaccattcaaaccggtgatgattgcatatca
attggcaatgaatctaaatacattaacattagtaacatcgaatgcggtccaggtcacgga
ataagcattgggagccttggaattatgggaaaaactgaggaagttgaatttgttcatgta
agaaatgttacattccatggaacaactaatggagttagaatcaaaacttggcagggagga
cacggtcatgcgaggaacattaaatttgaagatataacttcccattcttcgactcgacct
actgttatcgatcagtattattgcccccataaacaatgcaagaaccaaacatcagctgtg
gagatcagcaatatagcttatgaaaatatcaacggcacatcacctaaagaaatagcagtg
cagctttcattcagtgagtctgttccatgcaaaaatatcaccatgaaagacattaacttg
atatacgagaagcataaagacaaaacgtcatcgtattgtcttaatgcccgtggcttgaga
aacgggtccatccaagtgtatcttgtttacaagaagaagataatttttaggctttttttc
tttattaataagttcatagtatattgtttataa
DBGET
integrated database retrieval system
