Gossypium raimondii: 105798260
Help
Entry
105798260 CDS
T04129
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
gra
Gossypium raimondii
Pathway
gra00040
Pentose and glucuronate interconversions
gra01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
105798260
Enzymes [BR:
gra01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
105798260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
HSD_C
Motif
Other DBs
NCBI-GeneID:
105798260
NCBI-ProteinID:
XP_012483713
UniProt:
A0A0D2NKQ8
LinkDB
All DBs
Position
9:6397900..6400015
Genome browser
AA seq
454 aa
AA seq
DB search
MEVTKLRLVFFFSFAFIITRLLANIIEIDDFWKQREQEAWNITLAAYESSPENIINHLNY
NVDKVIRKISANQTIEFEDDLTNNTRRYLRGKHKKYTGPCMATNPIDSCWRCKKNWAKNR
KILAKCVLGFGHKTSGGSNGDYYLVTDNSDDDVLNPKPGTLRHAVIQKRPLWIIFARTMH
IKLSQELIVQSNKTIDGRGADVHIAYGCGITLQFVHNVIIHNIHIHHIFPSSGGLIRDSE
DHFGFRTVGDGDGISIFGSSNIWLDHISMSEGQDGLIDAIQGSTAITISNCHFTHHNDVM
LFGASDAYSKDQFMQVTIAFNHFGKELIQRMPRCRWGFFHVVNNDYTHWKMYAIGGSMHP
TIISQGNRFIAPHDLNAKEVTHRIYASESEWKNWVWRSEEDLLMNGAIFRTSGPLSPPDL
KFNQKDIIKAKPGTYVRTLTRFAGTLKCKKRIKC
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaactaagctgaggcttgttttcttcttttcttttgccttcataattacaaga
ctattggcaaatattattgaaattgatgacttttggaagcaacgtgagcaagaagcatgg
aatattactctggcagcttatgagtcgagcccagaaaacatcatcaatcacctcaactat
aatgttgataaggttattagaaaaattagtgccaaccaaaccatagaatttgaggatgat
cttactaacaacacaagaagatacttgagaggaaaacataagaagtacactggcccatgc
atggcaaccaatccaattgatagttgttggcggtgtaagaaaaattgggccaaaaaccgt
aaaatattggcaaaatgtgttcttggttttggccacaaaactagtggtggaagtaatggg
gattactacttggtgacggataattctgatgacgatgttctaaacccaaaaccaggaacc
ttacgtcatgctgtgatccaaaaaaggccattgtggattatctttgctcgtactatgcac
atcaaattgtctcaagagctaatagttcaaagtaataagacaattgatggtcgtggagca
gatgttcatatagcatatggatgtggaattacacttcaatttgtgcacaatgtcatcatt
cacaacattcatatccatcacatttttccaagttctggtggcctaatcagggactctgaa
gatcacttcggttttcgaacggtaggtgatggagatgggatttccatctttgggtcatca
aatatttggcttgatcatatttctatgtccgagggccaagatggacttattgatgcaatt
cagggttccactgccatcaccatctcaaactgccatttcacccatcacaatgatgtgatg
ttgtttggtgcaagtgacgcctattctaaagatcaattcatgcaagtcacaatagcattc
aaccattttggcaaggaattaatacaaagaatgcctagatgtcggtggggtttctttcat
gttgttaacaatgactacactcattggaaaatgtatgctattggtggtagcatgcatccc
accatcatcagccaaggcaacagattcattgctccacatgacctcaatgccaaagaggta
acccataggatctatgcatcagagtcagaatggaaaaattgggtatggagatcagaagaa
gatttgcttatgaatggagccatcttcagaacttctgggccactctcacctcccgatcta
aaattcaaccagaaagatataatcaaagctaagcctggaacatatgtcagaacactcact
cgttttgcaggaactcttaagtgcaagaaaaggatcaagtgctag
DBGET
integrated database retrieval system
