Gossypium raimondii: 105798444
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Entry
105798444 CDS
T04129
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
gra
Gossypium raimondii
Pathway
gra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105798444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gra03021
]
105798444
03036 Chromosome and associated proteins [BR:
gra03036
]
105798444
Transcription machinery [BR:
gra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
105798444
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
105798444
PBAF complex
105798444
GBAF(ncBAF) complex
105798444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
YEATS
Motif
Other DBs
NCBI-GeneID:
105798444
NCBI-ProteinID:
XP_012483954
UniProt:
A0A0D2RMA6
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Position
9:11580064..11582943
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AA seq
527 aa
AA seq
DB search
MSVNNNNPPKSIGASSSPFGNASQAQTQAQLSAGFQNQYQLSQAQALAHAQAQAQAQLAH
AQFQAHLQAQGLSLNQAQNAGIGNLGTSSPSMSTPGSASAKRILQRPPMRPPGVPVTNTM
SPLRIMDLTTAARKKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALTRKKVDIQ
EALKNPPCVQKTLRIYVFNTFANQMQTIPKKPNAEPPTWTLKIIGRILEDGVDPDQPAFV
QKTNPLYPKFSSFFKRVTISLDQRLYPENHIIIWEQARSPAPHEGFEVKRKGDKEFTVNI
RLEMNYAPEKFKLSSALVEVLGIEVDTRPRIIAAIWHYVKARKLQNPNDPSCFICDAQLM
KVFGEEKVKFTMVSQKISQHLSSPPPIHLEHKIKLSGNNPAGSACYDVLVDVPLPIQRDL
SALLANAEKSKEIEQCDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSRDLK
LASGEASRSSERERRSDFFNQPWVEDAVIRYLNRKPGAGGSDAPGST
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgaataacaataaccctcctaagagcattggggcgtcttcgtcgccctttggt
aatgcttcacaagcacaaacacaagcacaactcagtgctggttttcaaaatcagtatcag
ctatcccaagctcaggcccttgctcatgctcaagctcaagctcaagcgcagttagctcat
gcccaattccaagcacacttacaagctcaaggtttgtcccttaaccaagctcaaaatgcc
ggcattgggaacttaggtacgtcttcgccatccatgtcgactcctggcagtgcaagtgcc
aagaggatccttcaaaggccccctatgcgtcctcctggtgttcctgtgacaaatacaatg
tctcctttgagaataatggatcttacgaccgccgcacgtaaaaagaagcagaagcttccc
gagaaacagctgcaggatagagtggcggcaattcttcctgaatctgctctgtatacccag
cttcttgagtttgaggcacgtgtcgatgctgccttaactcggaaaaaagttgacatccaa
gaagcccttaagaatccaccttgtgttcaaaaaacacttcgaatatatgttttcaacaca
tttgctaatcagatgcaaacaatcccaaagaagcctaatgcagagccccctacatggacc
cttaagataataggaaggatcttggaagatggggtagatccagatcaacctgcatttgtt
caaaaaacaaaccccttataccctaagttttcatctttcttcaagagagtgacaatttcc
ttggatcagagactatatccggaaaatcatatcattatatgggagcaggctcgatcgcct
gctcctcatgaaggttttgaggtaaagagaaaaggggataaggaattcaccgtgaatatt
aggttggaaatgaattatgcgccagagaaattcaagctttcttcagctttagtggaagtc
cttggtattgaggttgatacacgccccagaattatagctgcaatttggcattatgtgaag
gctagaaaacttcagaacccaaatgatccatcttgctttatttgtgatgcacaacttatg
aaagtttttggggaagaaaaagtgaaatttaccatggtttcgcagaagatatcgcagcat
ttgtcttcgccgccacctatacatttggagcataagatcaagctttccgggaacaatcct
gctgggtctgcatgctacgatgtgttagttgatgtgccgttgcctatacagagggatttg
tctgctctgttagcaaatgcagagaagagcaaagagattgaacagtgcgacgaagcgata
tgtgctgccataaggaaaattcatgagcaccgtagaagacgtgcattctttctagggttc
agccaatctcctgtggaatttatcaatgctttaatcgagtctcagagccgggatcttaaa
ttggcatctggggaagcaagtcgaagttctgaaagagagcgacgatcagatttcttcaac
caaccatgggttgaagatgccgttatccgttatctgaatcgcaagccaggtgctggtgga
agtgatgcgccaggaagcacatga
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