Gossypium raimondii: 105798454
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Entry
105798454 CDS
T04129
Name
(RefSeq) pre-mRNA-processing factor 39-1 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gra03041
]
105798454
Spliceosome [BR:
gra03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
105798454
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_12
UTP6_C
TPR_16
NRDE-2
TPR_MalT
TPR_10
Motif
Other DBs
NCBI-GeneID:
105798454
NCBI-ProteinID:
XP_012483975
LinkDB
All DBs
Position
7:complement(26204336..26215232)
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AA seq
809 aa
AA seq
DB search
MGDSEAVVADSSAMMDYTSAAYNSAGSGAYSSQATGDPTASGGYPNSAGQEGQSSAMYDG
KPAGGSTDETAVAVENTAADASKAAGCNYPLNGNVINAAGNATTVENGNAFDNLGGASAA
PEFVDGSAPTMSAEEERLWSILRANSLDFNAWTVLIEETEKVAENNILKIRKVYDAFLAE
FPLCYGYWKKYADHEARIGSMDKVVEVYERAVQGVTYSVDIWVLYCAFAIETYGDPETIR
RLFERGLAYVGTDYLSFPLWDKYIEYEYMHQEWSRLAAIYTRIFENPNQQLDRYFNSFKE
LAGSRPLSELRAAEEAAANVSGPVSEADGQVNEGEVHPDAAEQMQKPLTAGSTEAEELEK
YVAIREELYKKAKELDSKIIGFETAIRRPYFHVRPLNVAELENWHNYLDFVEREGDFNKV
VKLYERCLIACANYPEYWIRYVLCMEASGSMDLANNALVRATQVFVKRQPEIHLFAARFK
EQNGDIEGAQAAYHLVHSEISPGLLEAIIKHANMECRLGKLEDAFSLYEQAIAIEKGKEH
SQTLPMLYAQYSRFSYLVSGNAKKAREILTGALDHVQLSKPFLEALIHFETILPSPRQID
YLQSLVDKFISPNSDGSAADKEDLSSIFLEFLSLFDDVQSIKRAEDRHAKLFLPHRPMSE
LRKRHAEEFLSSDKTKLVKSYSGAPSPGQSLMGAYPNAQNQWPAGYGAQPQTWPPTTQAQ
AQPWTSGYSQQAAYGAYSSYGSNYAAPQVPTSVPQIASYGVYPTTTYPMQSFPQQSYAQP
TAATTLTPAQQPPPAAAAAPQAYYGGPYY
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgggagatagtgaagcagtagttgccgactcatcagcaatgatggattatacttcagca
gcttataattctgctggttctggcgcttactcctcccaggctactggagatcctactgct
tctggtggttacccaaattctgctggtcaagaaggtcaaagcagtgcaatgtatgacggt
aagccagctggtggatcaacagatgagactgctgttgcagttgaaaatactgcagcagat
gcatcaaaagctgctggttgtaattatcctctaaatggaaatgttattaatgcagcagga
aatgcaaccacagttgagaatggaaatgcttttgataatttaggtggagcttctgctgca
ccagagtttgtggatggttctgcaccaaccatgtctgctgaagaagaacgtttatggagt
attttgagagccaattcgttggattttaatgcttggactgtattgatagaggaaacagag
aaggttgcagagaacaatatactgaaaattcggaaggtttatgatgctttcttggctgag
tttcctttgtgttatggttattggaaaaagtatgcggatcatgaagcacgcataggctcc
atggacaaagttgtggaggtctatgaaagagcagttcagggagtgacatattctgtggat
atctgggtgctatattgtgcttttgccattgaaacatatggagatccagagaccatccga
aggctttttgaacgaggattagcatatgttggaactgattatctatctttccctctttgg
gataagtacattgaatatgaatacatgcaccaggagtggagtcgccttgctgctatttat
actagaatatttgagaaccctaatcaacagctagataggtatttcaacagtttcaaagag
ttggctggaagtcgacctttgtcagaattaagagctgctgaggaagctgctgccaatgta
tcaggcccagtttcagaggctgatggccaagtcaatgaaggagaggttcatcctgatgct
gcagaacaaatgcagaagcctctaactgctggctcaacagaagcagaagagttggagaag
tatgttgccattagagaagaactatataaaaaggccaaagagctcgattctaagatcatt
ggttttgaaacagctatcagaaggccttactttcatgtgcggcccctcaatgttgctgag
cttgagaactggcataactacctggactttgtagaaagagagggtgacttcaataaggtg
gtcaaattatatgaaaggtgccttatagcatgtgccaattatcctgagtactggatacga
tatgttttatgtatggaagccagtggaagcatggatcttgctaataatgcacttgtgcgt
gctacgcaagtcttcgtcaagaggcaaccagagatccatctttttgcggctcgattcaag
gagcagaatggggacatagaaggcgctcaagctgcgtatcaccttgttcacagtgaaata
tcaccaggtcttcttgaagcaattatcaagcatgcaaatatggaatgccgtctggggaaa
ctggaagatgccttctctttatatgaacaagctattgccattgaaaaaggaaaagagcat
tctcaaacattaccaatgctgtatgcacagtattctagattttcttacttggtttctgga
aatgcaaagaaggccagggaaattttaactggagcacttgaccatgtccaactgtctaaa
ccattccttgaggccttaatacattttgaaacaattttaccatcaccaaggcagattgat
tatttacagtcattggttgacaagtttatatccccaaactcagatggcagtgctgcagac
aaggaagatctatctagcatatttttggagttcttgagtctctttgacgatgtacagtcc
attaaaagggcagaagatcggcatgctaaactatttttacctcataggcccatgtcggaa
ttaagaaaacgtcatgctgaagaatttttatcttcagataagacaaagcttgtgaaatct
tactctggtgccccttcacctggccagtctttgatgggtgcctatccaaatgcacaaaac
cagtggccagctggttatggggcacagcctcaaacttggccccctactacacaggcacag
gcacaaccatggacttctggctacagccaacaggctgcatatggtgcatatagcagttat
ggtagcaattatgcagctccacaagtgcccacatcagttccacaaattgccagttatggt
gtttacccgactacaacatatccaatgcagagctttcctcagcaaagttatgcccaacca
actgctgccacgactttaaccccagcgcagcaacctcctcctgctgctgctgcagctcct
caggcttattatggtggaccttactactga
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