Gossypium raimondii: 105798474
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Entry
105798474 CDS
T04129
Name
(RefSeq) uncharacterized protein LOC105798474 isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105798474
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105798474
Surveillance factors
Other surveillance factors
105798474
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
105798474
NCBI-ProteinID:
XP_012484000
UniProt:
A0A0D2Q398
LinkDB
All DBs
Position
9:complement(13298376..13305857)
Genome browser
AA seq
1701 aa
AA seq
DB search
MADGKLDLPDDLLSSKTSFDHSSLKGEAWDGNLEDKGHVGLLEGTKDQAISESNIPLSPQ
WLYSKPSDSKMLATGISGDIRATNSLSHRTSGDSNLKDSWRLDASQDKKDRRKTAVDLES
SRRWREEERETSLLGRRDRRKEDRRADISSMRDVSENKLTSSERWNDINSRGSGHESRRD
NKWSSRWGPEDKEKDSRTEKRTEADKEEALTDKQAFVSGGRIASERDNDSRDKWRPRHRL
EIHAGGAASHHSAPGFGLERGRVEVSTVRFAAGRGRSNANVSLQIGRPKSASVIGSCPLD
KNKSFNTYCYPRGKLLDIYRKQKTAPNFLTVPDEMDHLSPITQKETVEPLAFVPPDAEEE
ALLGDIWKGKATSSGVLYNTARDTSGGKQSSTLNREDSVESGENAAVNNIYLGNHAGTCY
ALDSQMIVTEEINSTKEGGQRRVLPSDTGVTHALISDGEIDGSINDADDIKSIDKGQVSD
LKMPKLPRLEDKESSIHFGEGGELPEDSGSLFDFSSLRATLSHNQIDIKGNYEAHSLESV
IPPEDLSLCYLDPQGVIQGPYLGIDIISWFEQGYFGTDLPVRLADAQDGSPFQELGDVMP
HLSMNSGSASSGSAVMRMQLPDSFEGSLGETISTSASAPEFKGSDIGCDHKQSLSAVETS
GTDFQFRRLTQSYPSEYQSSEDQSLHEFAAAQEEEIIFHGRPTSAGVDPSKISGEVQGPF
GNPASHLSITDEFSKTNIPSHRDDELHPFGLLMSELRSPSGLKCSQSSNIASSIGDRGQF
LDPWLDRETNFSDHSVVRTVPEQTSFREAWPDDYRRNALSNPNIHLGTTGGWPSSHKEQE
DNSFGLLRQLMSQKLPNEPLQEENHFSHRFPYSAGFDVEHVQGFDLMLSKNLNRQRSIHH
SDPHMEHLLELQFQQQRQLELQRQQQQLELKRQQQQQQQQLELQRQQQLELQRQQQQLEL
QRQQQLELQRQQQLELQLQQQQQLELQRQQQLRHHQIKLLQEQQQHLQLPHSQAQQLLCD
QLLQHQMPDPGYGQHIFDAARDNIIDQVQLRRHLLAELQQNPHASRHLDSSLEQIIQVKI
NHGALQGQQAEFLDFMSQAKYGNMLPSEHQLRLQQEQLQAQQLSMALRQQLGMEGDRRLA
GSLSVDDVGQFVGNPSSHHQAQSVGFNASDLYQQRLSSLEEHICNLKQNHALQDLPERGI
FDPNSTAFGRLTLPVAAPGMKVDNANSLDLAEHLYMHSNNQLDPFSSGNPSFYQQVLGNV
YASHPGAMESFHARKNGQLENSWTAKEIPQLNLEAELQRRESEVDSSAWASAGGVNENSK
KALLDLLYQKLGIQSMQSSEIDRQNSTSSSRGRETFWPVSEQQTSNFPFNHFPNQEVHVN
NLFPEGPQNSNSSALLQDHLFGVSPSASANHMVNCERLPLKANFGSFAEEQSFLLGIEDP
SRSSYADASLMGKSAVDIEIAELEGKDNENGMKGMSNRNGSVSGSEDNVLEQVEATLDCG
DLPSGIHSRHSSLGTDGSVRLYGYEIGVDKSAGEDASNDRLPSMLPKGLDKVPQKCPPVP
RVSSSQDVFSDQSSLSFVNQNNSASLATSDEGRQGTVANLGTMRSVETQASSKKDVRFRR
TSSCNDAAVSEASFIEILKKPVLRGTEAANSTSLEPSDGATQAGRSGKKKGKKGRQIDPA
LLGFKVTSNRIMMGEIQRLDD
NT seq
5106 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggaaaattagatctacctgatgatctcctctcctccaaaaccagcttcgac
cactcctctctcaaaggtgaagcgtgggatgggaacttggaggacaaaggacacgtgggg
ttacttgagggcaccaaagatcaagcaatttcagagagcaatatacctttgtctccacag
tggctttactctaaaccatctgattctaagatgttagctactggaatatctggggatata
agagccacaaattcgttgtcccatagaacctctggtgattccaatctgaaagatagttgg
cgtctggatgcgtctcaggacaagaaagaccggaggaagactgcagttgatcttgaaagc
agtcgccgttggcgtgaagaggagagagaaacgagcttacttggccgaagggatcgcaga
aaagaagaccgtcgggcagatatttcatcgatgagggatgtttctgaaaacaagcttact
tcttcagagagatggaatgatattaatagtcgtggttcaggacatgaatctcgaagagac
aacaagtggtcttcaagatggggtcctgaagacaaagaaaaggattctcgaactgagaag
aggacagaagctgataaggaagaagcccttactgacaaacaagcttttgtaagtgggggg
cgcatagcttctgagcgtgacaatgattctcgtgataagtggagaccacgacatcgtttg
gaaattcatgcaggtggggctgcttctcatcacagtgctccaggttttggtttagagagg
ggacgagtggaggtatcaactgtgcggtttgcagcaggacgaggtagatcaaatgctaat
gtaagcctacaaattgggaggccaaaatctgcttctgtcattggatcttgtcctctggac
aaaaacaaatcatttaacacatattgctaccctagaggaaaactgcttgatatttaccgc
aagcaaaagactgctccaaattttctcactgtacctgatgagatggatcatttatcacca
ataactcaaaaagaaactgttgagcctttagcttttgttcctcctgatgcagaggaagag
gctctccttggagatatatggaagggaaaagctacaagcagtggagtgttgtacaacaca
gctagagacacaagtggagggaaacaaagttctacacttaacagggaggatagtgttgaa
tcaggtgagaatgctgctgtaaacaatatttatctagggaatcatgctgggacatgttat
gccttagattcacagatgattgtgaccgaggaaataaatagtacaaaagaaggtgggcag
agacgtgttttaccatctgacacaggtgtaacccatgctttgatatcagatggggaaatt
gatggctccataaatgatgctgatgatataaaatctattgataaaggacaagtctctgat
ttgaaaatgccaaagctacctaggttggaggataaggaatcatccattcattttggagag
ggtggcgagcttcctgaagactcaggctctctatttgatttttcatcactacgggctaca
ctaagccataaccagatagatattaagggaaattatgaggcacattcactggaaagtgtt
atccctcccgaggatttgagtttgtgctatcttgatcctcaaggggtaattcagggacca
tatctgggaattgacataatttcatggtttgagcaaggttattttggtacagacttgcct
gttcgattggcagatgctcaggatggatctcctttccaagaacttggtgatgtcatgcca
cacctaagcatgaattctggttctgcatccagtggtagtgcagttatgagaatgcaatta
cccgattcttttgaaggtagcttgggtgagaccatatctacttctgcttctgctcctgaa
tttaaggggtctgacattggatgtgaccataagcagtctttgtctgctgttgagacttct
ggaactgattttcagttcagaagacttactcaaagttatccttctgagtatcagtcttct
gaagatcaaagcctccatgaatttgctgctgctcaagaagaggaaattatttttcatgga
aggcccacaagtgcgggggttgatccttctaaaatttctggtgaagttcaaggtcctttt
ggcaatcctgcaagccatttgtccattacagatgaattttcaaaaaccaatataccttct
catcgagatgacgagctgcatccctttggtttgttgatgtctgagttgaggagcccatct
ggtttgaagtgttctcaatcatctaatatagcttccagcatcggcgatagggggcagttt
ttagatccttggcttgatagagagacaaactttagtgatcacagcgttgttcgtacagtc
cctgaacagacttcttttcgtgaggcttggcctgatgattatagaagaaatgctttgtct
aaccctaacattcatctaggaactactggtggttggccctcgtctcacaaggagcaagag
gacaatagttttggccttttacgtcagctaatgtcacaaaagctgcccaatgagccactt
caagaggaaaatcatttctctcatcgctttccatattcagctggatttgatgtggagcat
gtccagggtttcgatcttatgctgagcaaaaatctcaaccgccagagatcaatccatcat
tcagatcctcatatggaacaccttttggaacttcagtttcaacagcagcggcagttggaa
cttcagcgacagcagcagcaattggaacttaagcgacagcagcagcagcagcagcagcag
ttggaacttcagaggcagcagcagctggaacttcagcggcaacagcagcaactggaacta
cagcggcagcagcagctagagttacagcggcagcagcagttggaactacagctgcagcag
cagcagcagttggaacttcagcggcagcagcagcttcgtcaccaccaaattaaattgtta
caggagcagcagcaacatctacagctgccacattctcaagctcagcaattgctttgtgat
caattgctgcagcatcagatgcctgatcctggttatggtcagcacatatttgatgctgct
agagacaacataatcgatcaggtccagttacgaaggcatctccttgctgaattgcaacag
aatcctcatgcttcaaggcacctggattcatcgctggagcagatcatccaagtgaagatt
aaccatggtgcactccaagggcagcaggctgagtttttggatttcatgtcacaggcaaag
tatggcaatatgcttccttcagagcatcagcttcgtcttcaacaagaacagttgcaagcg
cagcaattatctatggcacttaggcaacaattaggaatggagggggatagaagacttgcc
ggttcattgtctgtagatgatgttggtcagtttgttgggaaccctagcagtcatcatcag
gctcaatctgtagggtttaatgcttcagatctttaccagcagaggctatcatctcttgaa
gagcatatctgcaatcttaagcagaatcatgctttgcaggacctaccagagcgagggatt
tttgaccccaactccacagcatttggcaggttgactcttcctgtagctgctcctggaatg
aaagtagacaatgcaaattctctagatctagccgaacatctttatatgcactccaacaac
caactggatccattttcttcaggtaacccctctttttaccagcaagttttaggcaatgta
tatgcttctcatcctggtgcaatggagagcttccatgctaggaaaaatgggcagctagaa
aatagttggactgcaaaagagataccacaattaaatcttgaagcagaactgcaaagaagg
gagtctgaagttgattcaagtgcttgggcatcagctggaggggttaatgaaaactctaag
aaggctttactggaccttctttaccaaaaacttggtattcaatctatgcaatcatcagaa
atcgatcgtcagaattctacttcatcttccagagggcgggaaaccttttggcctgtttct
gagcaacaaacttccaattttccttttaatcattttccaaatcaggaagttcatgtgaac
aacttgtttccggaaggccctcaaaattctaattcaagtgccttgttgcaagatcatttg
tttggagtttctccaagcgcatctgccaaccacatggttaactgtgaaagattgcctctt
aaagccaattttggctcatttgcagaagagcagtcattcttgttgggcattgaagatcct
tctcgtagtagctatgcagatgctagcttgatgggaaaatcagctgtggatatagaaata
gcagaactggaaggaaaagacaacgaaaatggaatgaaaggcatgagtaataggaatggt
tctgtgtcagggtctgaggacaatgtattagaacaagtagaggcaaccttggactgtggt
gacctaccaagtggcatccatagccggcatagttctcttggaaccgatggaagtgtcagg
ttgtatgggtatgaaattggagtagataagtcagctggagaagatgcttctaatgatagg
ttaccttcaatgctgccaaaggggcttgacaaagttccacagaaatgcccacctgtgcca
cgggtttcttcgtcccaggatgtcttttctgatcaaagctcactgtcatttgttaatcag
aataattctgctagccttgcaacttctgatgaaggaagacaggggacggtggcgaatcta
ggaacgatgaggagtgtagaaactcaggcatctagcaagaaagacgtccgttttaggagg
acctcatcttgcaatgatgctgcagtgtctgaagcatcattcattgagattctaaagaag
ccggttcttcgtgggactgaggcagctaacagcacttctttggaaccttctgatggtgca
acacaagctggacgaagtggcaagaagaaagggaaaaagggaagacagattgatcctgct
ctactgggtttcaaagtcaccagcaaccgtataatgatgggtgagatccaacgccttgat
gattga
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