Gossypium raimondii: 105798704
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Entry
105798704 CDS
T04129
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
gra
Gossypium raimondii
Pathway
gra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
105798704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gra03400
]
105798704
DNA repair and recombination proteins [BR:
gra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
105798704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
105798704
NCBI-ProteinID:
XP_012484326
UniProt:
A0A0D2Q4B6
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Position
9:21322418..21330678
Genome browser
AA seq
943 aa
AA seq
DB search
MDENFDEQNKLPELKLDAKQAQGFLSFFKTLPNDPRAVRFFDRRDYYTAHGENATFIAKT
YYRTTTALRQLGSGSNGLSSVSVNKNMFETITRDLLLERTDHTLELYEGSGSNWRLMKSA
SPGNLSSFEDVLFANNEMQDTPVVVALLPNFRENGCTVGFSYVDLTKRILGLVEFLDDSH
FTNVESALVALGCKECLLPLESGKSSECRTLSDALTRCGVMVTERKKTEFKARDLVQDLG
RLVKGSIEPVRDLVSGFEFAPAALGALLSYAELLADEGNYGNYSICRYNLGSFMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDISEINSRLDLVQAF
VEDTELRQDLRQHLRRISDIERLMRNIQRTRAGLQHIVKLYQSSIRVPHIKSALEKYDGQ
FSSLIKERYLDPFELLTDDDHLNKFIALVETSVDLDQLENGEYMISPSYDDALATLKSEQ
ESLERQIHNLHKQTAFDLDLPVDKALKLDKGTQFGHVFRITKKEEPKVRKKLSTQFIVLE
TRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVVQTTATFSEVFEHLAGFLSELD
VLLSFADLASSCPTPYTRPRITPPDVGDIVLEGSRHPCVEAQDWVNFIPNDCRLVRGKSW
FLIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCEKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATENSLVIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATH
FHELTALAHENGNYELQKKQIVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPESVVALAREKAAELEDFSPTSIISTDAGQEQEGSKRKRGYDADDISRGAAKAHK
FLKEFAELPLETMDLKQALQQVTKLKDDLQKDVNNSEWLQQFF
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaattttgatgaacaaaacaagcttccagagctcaaactagacgctaagcag
gctcaagggtttctctcatttttcaaaactctaccgaatgatccaagggctgttcggttt
tttgatcgccgggattattatactgctcatggtgaaaatgcaacctttatcgcaaaaacg
tattatcgtactactactgctctccggcaactcggtagtggctcgaatggcctttcaagt
gtaagtgttaataaaaacatgtttgaaacaatcacccgtgatcttctcctggagagaaca
gaccacactctggagctctatgaaggtagtggctccaattggaggttgatgaaaagtgcc
agtcctgggaatctgagcagttttgaagatgttctctttgccaacaatgagatgcaggat
acacctgttgttgtcgcactgcttcctaacttccgtgaaaatggttgcactgttggattt
agttatgttgatttaacaaagagaatacttggtttggttgagtttcttgatgatagtcac
tttactaatgtggagtcagctttggttgctcttggttgtaaggagtgccttttgcccttg
gagagtggaaaatccagtgaatgtagaactctgagtgatgctttgaccagatgtggtgtt
atggtaactgagagaaagaaaactgaatttaaagcaagggatctggtgcaggatcttggt
aggctagtcaaaggctccattgaaccagttcgagacttggtttctgggtttgaatttgca
ccagctgctttaggagccttactttcttatgcagaattactagcagatgaaggaaattat
ggaaactatagcatttgtagatacaatctgggcagcttcatgaggttagattctgctgca
atgagggcattgaatgtcctagaaagcaaaactgatgcaaacaaaaattttagtttgttt
ggtcttatgaatagaacctgtaccgctgggatgggtaagcggttgcttcatatgtggcta
aaacagcctttgttagatataagtgagataaattcaaggctagatttggtacaggctttt
gtggaggatactgagcttcgccaagatttgagacagcatctaagaagaatttcagatatt
gaacgacttatgcgcaatattcaaaggacaagagctggtttgcagcatattgtaaaactt
tatcagtcaagtataagagttccccacattaaaagtgccctggaaaaatatgatggacag
ttttcttccttgatcaaggaaagatatttggatccttttgagctcttgactgatgatgat
catttgaacaagtttattgctcttgttgagacttctgtcgacctagatcaacttgaaaat
ggggaatacatgatttcacctagttatgatgatgcacttgctacactaaaaagtgagcag
gagtcactagagcgccaaatacacaatttacataaacaaactgcttttgatcttgatctg
ccggtagacaaggcattaaagttagataagggcacacagtttggacatgttttcagaatt
acaaagaaagaagagcccaaagtaaggaaaaagctctccacccaatttattgtccttgaa
acccgaaaggatggagtgaaattcactaacacaaagcttaaaaagttgggggaccagtac
caaaaggtacttgaggagtataagaattgtcaaaaagagctagtaaatcgagtggttcaa
actacagcaactttctctgaggtatttgagcacttagctgggtttctctctgaattggat
gtcctacttagttttgcagatttagcttcaagttgtcctaccccatacacaagacccaga
attactccaccagatgtgggggatattgttttagaaggaagtagacatccttgtgtggag
gctcaggactgggttaattttataccaaatgattgtagacttgtaagaggcaagagctgg
ttcctgatcatcactggacctaatatgggtggaaaatcaacattcatccgccaggttggt
gttaacattctaatggcacaagtaggctgttttgttccttgtgaaaaagctagcatttct
gttcgagattgtatttttgcccgtgttggtgctggtgactgccaactacgtggagtttct
acctttatgcaagaaatgcttgaaactgcatcaatattgaaaggagctactgagaattca
ttggtgatcatcgatgagttggggcgaggaacatcaacctatgatggatttggtttagca
tgggccatatgtgagcatattgttgaagtgattaaagcacccacactgtttgctacccac
ttccatgaactgactgctttagctcatgaaaatggcaattatgagttgcagaaaaaacag
atcgttggtgtggcaaactatcatgttagtgctcacattgactcatcaagtcggaaattg
acaatgctgtacaaggttgagccaggggcatgtgatcaaagttttggtattcatgtggca
gaatttgccaattttcctgaaagtgttgttgctcttgcaagagaaaaggctgctgaattg
gaagatttctcaccgacttcaatcatttcaactgatgctggacaagagcaggagggttca
aaaaggaagagagggtatgatgctgatgacatatctaggggtgctgcaaaggctcacaag
tttttaaaggagtttgctgagctgccattggagaccatggacctgaaacaggctctgcaa
caagtaaccaagctaaaggatgacttacaaaaagatgtgaacaactctgagtggcttcag
caattcttctag
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