Gossypium raimondii: 105798877
Help
Entry
105798877 CDS
T04129
Name
(RefSeq) probable pectate lyase 20
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
gra
Gossypium raimondii
Pathway
gra00040
Pentose and glucuronate interconversions
gra01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
105798877
Enzymes [BR:
gra01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
105798877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
105798877
NCBI-ProteinID:
XP_012484564
UniProt:
A0A0D2NB58
LinkDB
All DBs
Position
7:24549983..24553786
Genome browser
AA seq
446 aa
AA seq
DB search
MGISNRLLSSLALLVTFILFFVCVKASAEKTELNSRFSEENKLQGLKNSSMEEGLEDVQW
INEHSVDNPEEIASMVDMSIRNSTERRKLGYFSCGTGNPVDDCWRCDRHWYLRRKNLANC
GIGFGRNAIGGRDGRYYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIRLKQE
LIMNSFKTIDGRGANVHIANGACITIQYVTNIIIHGIHIHDCKPTGNAMVRSSPSHYGWR
TMADGDGISIFGASHIWVDHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSD
SYVRDKQMQVTVAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQG
NRYLAPFNRFAKEVTKRVERSKSKWRHWNWRSEGDMFLNGAYFTPSGAGAAASYAKASSL
AAKSSALVGTITSNAGALSCRRGFMC
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggggatttctaacagattgctctcttcgttagctttgctagtaacgtttattttgttt
ttcgtttgtgtcaaggcctcagcagagaaaacagagctgaattcaaggttcagtgaagaa
aacaagttgcagggcttgaaaaactcatcaatggaagaggggttggaggatgtgcaatgg
ataaatgagcactcagtcgacaatccagaggaaattgcttcaatggtggatatgagcata
agaaatagcacagagaggaggaaattgggatatttctcatgtggaacagggaatccggtt
gatgattgctggcgatgtgatcggcattggtatctcaggcgaaagaaccttgccaactgt
ggcattggctttggacgcaacgccattggtggtcgtgatgggaggtactatgtggtgact
gaccctagggatgacgaccctgtgaaccccaaaccaggcaccctccgccatgctgttatc
caggaccgcccactttggatcgtgttcaagcgtgacatggtgatcaggttgaagcaggag
cttataatgaacagttttaagaccatcgatggtcgtggtgccaatgtgcatatcgctaat
ggggcctgcatcaccatccagtatgtcactaatattatcatccatggaatccacattcat
gattgtaagcccaccggcaacgccatggttcgaagctccccatctcattacgggtggagg
accatggctgatggggatggcatttccatatttggggcaagccatatttgggttgaccat
aattcactctctaactgtgctgatggactcattgatgctataatgggttccactgcaatt
accatctcaaacaactacttcacccaccataacgaggttatgttgttgggacatagtgat
tcttacgtaagagacaagcagatgcaagtgaccgttgcttataaccatttcggtgagggt
cttatccaaagaatgccaaggtgtagacatggatattttcatgtagtgaacaacgactac
acccactgggagatgtatgccattggtggaagtgcaaatcccaccattaacagccagggc
aaccgataccttgcccctttcaaccgctttgctaaagaggttacaaagagagtggagaga
tcgaagagtaaatggagacattggaattggaggtcagaaggagacatgtttttaaatgga
gcatatttcactccatcaggagcaggagcagcagccagctacgctaaggcctctagctta
gcagccaaatcctctgccttagttggcaccattacttcaaatgcaggcgccctttcttgt
cgccgtggtttcatgtgttag
DBGET
integrated database retrieval system
