Gossypium raimondii: 105798891
Help
Entry
105798891 CDS
T04129
Name
(RefSeq) uncharacterized protein LOC105798891 isoform X2
KO
K11797
PH-interacting protein
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gra04121
]
105798891
Ubiquitin system [BR:
gra04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
105798891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WDR55
Beta-prop_SCAP
WD40_MABP1-WDR62_2nd
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Bromodomain
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_EIPR1
VPS8_N
WD_LRWD1
WDR90_beta-prop_4th
Caps_syn_GfcC_N
Motif
Other DBs
NCBI-GeneID:
105798891
NCBI-ProteinID:
XP_012484582
UniProt:
A0A0D2STT0
LinkDB
All DBs
Position
9:complement(29271339..29283885)
Genome browser
AA seq
1727 aa
AA seq
DB search
MALQKYVPSTDSPSVRMKPLSFSTKVRAQFADGETDDSKKRNIDVDLREVYFLIMHFLST
GPCKRTCGQFWNELLENQLLPRRYHAWYSRKGEDSGHENDDGLSFPLSYAQLVERNPHIE
KDHLIKLLKQLLLTAPSQSKDKSARHTPNAADVPTLLGTGPFSLLSYDDNKGKSEAKRPP
VHMRWPHMHADQVRGLGLREIGGGFTRHHRSPSIRAACYAIAKPSTMVQKMQNIKRLRGH
RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNFMVAS
ASNDCIIRVWHLPDGQPISVLRGHTGAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARNA
EIRPRIYVPKPSDSLAGKNSSSSSTSVQQSHQIFCCAFNANGTVFVTGSSDTLARVWVAC
KPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCSVSSRYSTADSLKEESVPKFRNSWFSQD
NIVTCSRDGSAIIWVPKSRRSHGKVGRWCKHYHLKVPPPPLPPQPPRGGPRQRILPTPRG
VNMIIWSLDNRFVLAAIMDCRICVWNAADGSLVHSLSGHTDSTYVLDVHPFNPRIAMSAG
YDGRTIVWDIWEGTPIRIYEIARFKLVDGKFSSDGTSIILSDDVGQLYILNTGQGESQKD
AKYDQFFLGDYRPLIHDTSGNSLDLETQLTTYRRNMQDLLCDSGMIPYTEPYQTMYQKRR
LGALGLEWKPGALNLFVGPNFSLDQDYQIPPLADLDAIAAPLPAFLDAMDWEPEIEVQSD
DNDSEYNVIEEYSTGGEQGSLGSLSGDPECSTDDSEIDDTHKDARRRSKRKKPKADSEFM
TSSGRRVKRRNLDECDGNSLSNGPNRKSRNGRKTLRRKSSTSKTSSKSSRPRRAAARNAL
HFFSKITGTSTDGEDEYDSEGDSSESESMIQDSYVESDESDRDLPNEQIKLSKGKEVFFG
ESEDVAKANALPESHNAGNRKRLVLKLPGRYPNKLVPPERRENSASFSRKASEGSIKHIS
SLDMGCSSVDANNSMIGGLRGQSDKIEDHLDLTEAYKDGGHRAIKWGGVKARTSKRLRFG
ELVSSDVYAGSTRCLRDHKENNVNGYVGPEKACATVSPSTDIQTCKEDMNGKVTIPENLG
NEREVLDDPDNAEDPSSPSEHIKYPESPKSVNRSAEDMPISSFNQNGQPSEVKEGNMPIS
TKLRFFSKRTTIDDESPGLKMKISRGHMNGGYDALNDSTSERAKGLVSEVPLVDGSNDIC
SDNEGDGLRDSDAQIDRIPMSTPLVSGGLQPDSKKMYDVVYRRSKTQRDRSNLESGCAIV
ESTANVSNHNSSMIGDLHEGSTNGTHNKLSSRLKGHVLHSEDVHRSTQDGSTNGSQLPSK
EWGSSSRMAVGSRSTRNRRSNYYFHDTSPIRKPNQSTRRGSWLMLTTHEEGSRYIPQLGD
EIVYLRQGHQEYAAHIGLKEAGPWTSSKGGSMLRAVEFCRVEGLEYSTSPGSGESCCKMT
LKFTDPSSSMFDRAFNLTLPDMTGFPDFLVERTRFDTAIDRNWSCRDKCKVWWKDASGDD
GSWWDGRIVAVKPKSYEFPDSPWERYTVQYRSEPKEPQLHSPWELFDADTQWEQPHIDSN
IRDNLLSAFAKLEKSSHKAQDQYAVNKLKQVSQKSNFTNRYPVPLSFDIIQSRLENNYYR
SLEAVQHDIQVMLLNAESYFGRNAELLSKLRRLSDFFMRTLSSLQPP
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atggctctccagaaatatgttccctccactgattctccttctgttaggatgaagccattg
agtttttccactaaggtgcgagctcaatttgcggatggagagacagatgattctaagaag
cgtaacatagatgttgatctcagggaagtttactttttgattatgcatttcctttcaact
ggcccttgtaaaagaacatgtggacagttttggaatgaattgcttgaaaatcaacttcta
cctagaaggtatcatgcttggtattcaaggaaaggggaagatagtggtcatgaaaatgat
gatggcttgtcattccctttaagttatgctcagttggtggagaggaatcctcacattgaa
aaagatcacttgataaagcttttgaagcagttgttattaactgcaccctcccaatccaaa
gacaaaagtgcaagacacactccaaatgctgctgatgtccccactcttttaggaacgggg
cccttttctcttttgagctatgatgacaacaaaggaaaaagtgaagccaaacgtcctcct
gttcatatgcgttggcctcatatgcatgcagatcaggttcgtgggttgggtttaagggaa
attgggggtggtttcacaagacatcatcggtccccatctatacgcgcagcatgttatgcc
attgcaaaaccatcaactatggtgcagaagatgcaaaatatcaagaggttgcgagggcac
cggaatgctgtctattgtgcaatatttgatcgatctgggaggtatgtcattactggttct
gatgaccgtcttgtgaaaatctggtctatggagactgcatattgcttagctagctgccgt
ggacatgaaggtgacataactgacctggctgtcagttccaataattttatggtggcgtct
gcttcgaatgactgcattattcgtgtttggcacttgccagatgggcaaccaatttcagtt
ctgcgaggacataccggagctgttactgccattgcttttagccctaggccaggctctgta
tatcagcttctatcgtcatctgatgatgggacatgtaggatatgggatgctaggaatgcc
gaaatccgtcctcggatatacgttccaaagccttcagattctttagctggaaagaacagc
agttcatcttcaacttctgtgcaacagagccatcaaattttttgttgtgcgttcaatgct
aatggaactgtctttgtcactggtagctcagacactttagctagggtgtgggttgcttgt
aaacccaacacagatgattctgatcaaccaaatcatgagattgacgtgttatctggacat
gagaatgatgtaaattatgtgcaattcagtggttgttctgtttcatcaagatattctaca
gcagacagcttgaaggaagagagtgttccaaaatttagaaactcctggttttctcaggac
aacattgttacctgttcccgtgatggcagtgcaattatttgggttccaaaatctcgtaga
tcacacggtaaagtgggtcgctggtgtaaacattatcatcttaaagttccacccccacca
ttgcctccacaaccgccaagagggggtccacgccagagaattcttccaactcctcgtggt
gtaaatatgataatctggagcctagataaccgctttgtccttgctgctatcatggattgc
agaatatgtgtatggaatgctgctgatggcagcttggtacattctttgtctggtcatact
gattctacatatgttttggatgttcatcctttcaacccacggatagctatgagtgcaggc
tatgatggaagaaccattgtctgggatatatgggaaggcacaccaattcgaatatatgaa
attgctcgtttcaagttggttgatgggaagttttcatcggatgggacatccattatactt
tcagatgatgttggtcaattatacatactaaatacaggccaaggggaatctcagaaggac
gccaaatatgatcagttctttcttggtgattatcgacctcttatccatgacacctctggg
aattcacttgatctggaaactcagcttactacatatagacggaatatgcaagatcttctt
tgtgactcagggatgattccatacacagaaccctatcagaccatgtaccagaaaaggcga
ttaggtgctttaggcttggagtggaaacctggtgctttgaacctttttgtggggccgaac
ttcagtctagaccaggattaccaaatcccgcccttggcagatttagatgcaattgctgct
cctctgccagcattcttagatgccatggattgggagccagaaattgaagtgcaaagtgat
gataatgattcagagtataatgtcatagaggagtactctacaggaggggagcaaggaagt
ttaggttctctctctggtgatcctgagtgcagtacggatgacagtgagattgatgatact
cataaagatgcccgtcgtcgatcaaaaaggaaaaaaccgaaggctgatagtgagtttatg
acatcttccggtaggcgtgttaaaagaaggaatttggatgaatgcgatggcaactcctta
agtaatggccctaataggaaatcaagaaatggacgaaaaactttacggagaaagtcttct
acttcaaaaacttcctcaaaatcatcaagacctcgaagagctgctgcacgcaatgcttta
cacttcttttctaaaataactggaacatcaactgatggggaagatgaatatgactctgaa
ggtgattcttctgagagtgaatctatgatacaagattcatatgttgagagtgatgaatct
gatagagatttgccaaatgaacaaatcaaactttcaaaaggaaaagaagtcttctttggt
gagtctgaggatgttgctaaagctaatgcacttcctgaatctcataatgctgggaacagg
aagagattggtccttaaattgcctggccggtatccaaataagcttgtgccacctgaaaga
cgggaaaattctgcaagtttttcacgcaaagcttctgaaggaagcataaaacatataagc
tcattggatatggggtgttcttctgttgatgcaaacaatagcatgataggtggactaagg
gggcaatcagacaagattgaagatcatttagatctgactgaagcttacaaagatgggggg
catagggcaattaagtggggaggagttaaggctcgtacttccaaacgtctgagattcggt
gaacttgtgtcatcagatgtgtatgctgggtctacacgatgtcttcgtgaccacaaagaa
aataatgtcaatggatatgtaggaccagaaaaggcttgtgctactgtatccccgagcaca
gatatccaaacttgcaaggaggatatgaatggtaaggtgacaataccggagaaccttggg
aatgaaagagaagttttggatgatcctgataatgctgaggacccctcaagtcctagtgaa
catataaaatatcctgaatcaccaaaatcggtcaacagatcagctgaggatatgcctatc
tcatcttttaatcagaatggacagccttctgaggtaaaagagggcaatatgcctatttca
actaagttaaggtttttctccaaaaggaccacaattgacgatgaaagtcctgggctgaaa
atgaaaatttcaagaggtcatatgaatggtggatatgatgcattaaatgatagcacctca
gagagggcaaaaggcctagtttcagaggtacccttagttgatggatccaatgatatctgt
tcagataacgaaggtgatgggttgcgagattcggatgctcaaattgatagaattcccatg
tcaactcctcttgtctctggggggttacaaccagattcaaaaaagatgtatgatgttgtt
tatcgaagatcaaagacacagagggataggtccaatttagaaagcggctgtgccattgta
gaaagcactgcaaatgtatctaaccataatagtagtatgataggagatctccatgaaggt
tcaacaaatgggactcataacaaactatccagcaggttgaaagggcatgtacttcattca
gaagatgtacatagaagcacccaggatggttctacaaatgggtctcaacttcctagcaag
gaatggggatcaagttcaaggatggcagttggatcgaggtctactagaaacaggagaagt
aattactatttccatgacactagtccaatacggaaacccaatcaatcaacaagaagagga
tcatggttaatgttgacaacacatgaggaagggtctcgctatattccccaactaggtgat
gaaattgtatacttgagacaggggcatcaagaatatgcagctcatattggcttgaaggaa
gcaggaccatggacttcatcaaaaggagggagcatgttaagggcagtggaattttgtaga
gttgaagggcttgaatattccacttctccagggtctggggagagttgctgcaaaatgact
cttaaatttacagacccttcttccagcatgttcgatagagcatttaacttgacactgcct
gatatgactggtttccctgacttccttgtagaaagaactcgctttgatactgctatcgat
agaaattggagctgcagggataagtgcaaagtctggtggaaagatgcgagtggggacgat
ggaagttggtgggatggccggattgtggctgtgaagcccaaatcttatgaatttcccgat
agtccatgggaaaggtacactgttcagtaccggagtgagcccaaggaaccacaacttcac
agtccatgggagctctttgatgcggatactcagtgggagcagcctcatattgatagtaat
atcagagataatctactttcagcctttgccaaattggagaaatcttctcacaaagctcag
gatcaatacgcagtaaataaattgaagcaagtttcacagaagtctaattttacaaacagg
taccctgtgccattatctttcgatattatccagtctaggttggagaacaactattatcga
agtttagaagcagtgcagcacgatatccaggtaatgttgttgaatgcggagtcttacttc
gggagaaatgcagagctcttatctaaactcagacgcctatccgacttttttatgcggaca
ttgtcgtctttgcagccgccgtag
DBGET
integrated database retrieval system
