Gossypium raimondii: 105799128
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Entry
105799128 CDS
T04129
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
gra
Gossypium raimondii
Pathway
gra04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
105799128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gra04131
]
105799128
Membrane trafficking [BR:
gra04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
105799128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_WDHD1_1st
WD40
WD40_Prp19
zf_RING_Vps8
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_HPS5
zf_RING_Vps8_fungal
zf-RING_2
EIF3I
PEP5_VPS11_N
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_WDR11_2nd
zf-C3H2C3
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
105799128
NCBI-ProteinID:
XP_052476896
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Position
9:complement(33318345..33326527)
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AA seq
950 aa
AA seq
DB search
MSPFPSENGVEGDDEREEEEDEDVDDDEEEEEAEEDEEEPRLKYQRMGGSIPSLLSGEAA
SCISVAERMIALGTHDGTVHILDFLGNQVKEFAAHSAAVNDLSFDIEGEYIGSCSDDGSV
VLNSLFTDEKLTFEYHRPMKAIALDPDYARKTSRRFVTGGLAGHLYFNTKKWLGYKDQVL
HSGEGPIHAVKWRTSLIAWANDAGVKVYDAANDQRITFIERPRGTPHPEILLPHLVWQDD
TLLVIGWGTSVKIAAIRTNLNKGTNGTYKRVTSNMNQVDIVASFQTSYYISGIAPFADAL
VVLAYIPSEDGEKEFSSAMPSRQQGNAQRPEVRIVSWNNDELATDALPVHGFEHYKAKDY
SLAHAPFSGSSYAGGQWAAGDEPIYYIVSPKDVVIAKPRDAEDHISWLLQHGWHEKALAA
VEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSATAWERWVFHFAHLRQLP
VLVPYMPTENPRLRDTAYEVALVALATNPSVHKDLLSTVKSWPRVIYSALPVISAIEPQL
NTSSMTDALKEALAELYVINGQYEKAFSLYADLMKPDIFDFIEKHNLHDSIREKVVQLMM
VDCKQAVNLLIQNRDLIAPSEVVSQLLNTRNKCDSRYFLHLYLHSLFEVNPHAGKDFHDM
QVELYVEYEPKMLLPFLRSSQHYTLEKAYEICDRRDLLREQVFILGRMGNSKQALAVIIN
ELGDIEEAVEFVTMQHDDDLWEELIHQCLHKPEMVGVLLEHTVGNLDPLYIVNMVPNGLE
IPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLSVKYYNEAKRAVCLSNEEDDARSK
RDASRASQVITPSVRNMEVKSKTRGGGRCCMCFDPFSIQNVSVVVFFCCHAYHTTCLMES
TEINSTNKKGTGGPSEGLYEYEYEEEQEDDNGSEAGGPRMRCILCTTATS
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgtctcccttcccatccgaaaacggcgtcgaaggagacgacgagagagaagaagaagaa
gacgaagatgtagatgatgatgaagaagaagaagaagcggaggaggacgaagaggagccc
aggcttaagtatcaaagaatgggaggtagcatcccttccctgctctcaggcgaggccgcc
tcctgtatctccgtcgccgaacgcatgatcgcactcggaacgcacgatggaaccgttcat
atcctcgactttttgggaaatcaggttaaggaatttgctgctcattcagctgcagtgaat
gaccttagttttgatatagaaggtgaatatattggaagctgttcagatgatggctctgtt
gtactaaatagtcttttcactgacgagaaattgacatttgagtatcatcgtcctatgaaa
gccattgcacttgaccctgattatgcaagaaaaacatctaggagatttgtaactggtggt
ttagctggtcacttgtattttaataccaaaaagtggcttggctataaggatcaggtgttg
cactcaggtgaaggtccaatccatgcagtgaaatggagaacgagtctcattgcttgggct
aatgatgcgggagtaaaagtttatgatgctgcaaatgatcagcggattacatttatagaa
agaccaagagggactcctcatcctgaaatcttgctccctcatttagtttggcaggatgat
actttattggtgattggctggggtacttctgtgaaaattgctgcaataagaacaaatctg
aacaagggaacaaatggaacatataagcgtgttacgtctaacatgaaccaagtagatatt
gtggcatcgtttcaaactagctattatatatcagggattgcgccttttgctgatgctttg
gttgttctagcctatattcctagtgaagatggagagaaggaatttagcagtgcaatgcca
tcaagacagcagggaaatgcacagagaccagaggtacgtatagtgtcttggaacaatgat
gaattggcaactgatgctctacctgtacatggctttgagcactacaaagcaaaggactat
tccttggctcatgcccccttctcaggcagcagttatgccggtggacagtgggctgctggt
gatgaaccaatatactatattgtatcaccaaaggatgttgtcatagcaaaacctagggat
gctgaggatcacatttcatggcttcttcaacatggatggcatgaaaaagctttagcagca
gttgaggctgggcagggacgaagtgaacttcttgatgaagtcggatctagataccttgat
catttgattgtggaaaggaaatatgctgaggctgcatccttgtgtcctaaattgttgcga
ggatctgctacagcttgggaaagatgggtattccattttgctcatctccgtcagcttcct
gtattggttccatatatgccaacagaaaaccccaggctgcgtgatactgcttatgaggtt
gctcttgtggctctggcaacaaatccatcagttcataaggatcttttgtcaactgttaaa
tcatggccacgtgtcatttattccgcattgcctgtcatttctgcaattgagccccagcta
aatacttcgtcaatgactgatgcccttaaagaggcacttgcagagttgtatgttattaat
gggcagtatgagaaagctttttcactgtatgctgatctcatgaagccagatatatttgac
ttcattgaaaagcacaacttgcatgattctattcgtgaaaaggttgtgcagttgatgatg
gttgattgtaagcaagcagttaatttgttgatccaaaatagggacttaattgcaccatct
gaagttgtttcacagcttctgaatactagaaataagtgtgattcgagatatttcttgcat
ttatatctgcattccttgtttgaagtaaacccacatgctggcaaggattttcatgatatg
caggtagagctttatgttgagtatgagccgaagatgctacttccttttcttcgcagtagt
caacattacacattggagaaggcgtatgagatctgtgatagaagagatcttttaagggag
caagtattcatccttggaagaatggggaattcaaaacaagctcttgctgtcatcataaat
gaattaggagatatagaagaggctgtagaatttgtgaccatgcagcatgatgacgatctt
tgggaagaactaattcatcaatgcctccataaaccagaaatggtgggcgtcttattggaa
cacactgttggcaatcttgatcctctctatattgtaaatatggtgcccaatggcctagag
atacctcggctgagggatcgtctagtcaaaattattactgattacagaactgaaacttct
ctcagacatggctgcaacgatatacttaaggctgattgtgttaacctgtcggtaaaatac
tacaatgaagcgaaacgagcagtttgcttgagtaatgaagaagatgatgcacgatccaag
agggatgccagtagagcttctcaagtcataacacctagtgtgagaaacatggaggttaag
tctaaaacaaggggaggtggaagatgttgcatgtgttttgaccctttctcgatacaaaac
gtatcagtcgttgtgttcttttgctgccatgcttatcacacgacttgcttgatggaatct
actgaaattaatagcaccaacaaaaaagggactggaggcccctctgaggggttatatgag
tatgaatatgaggaggagcaggaggatgacaatggtagcgaggccggtggtcctcggatg
cgatgtattctatgtactacagctacgagttaa
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