Gossypium raimondii: 105799293
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Entry
105799293 CDS
T04129
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
gra
Gossypium raimondii
Pathway
gra04120
Ubiquitin mediated proteolysis
gra04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
105799293
04120 Ubiquitin mediated proteolysis
105799293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gra04121
]
105799293
Enzymes [BR:
gra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105799293
Ubiquitin system [BR:
gra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105799293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
FlxA
zf-RING_16
zf-RING_11
zf-RING_5
GTP-bdg_M
Motif
Other DBs
NCBI-GeneID:
105799293
NCBI-ProteinID:
XP_012485216
UniProt:
A0A0D2Q880
LinkDB
All DBs
Position
9:35694850..35703467
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AA seq
542 aa
AA seq
DB search
MMRLRTYAGLSLVTTLAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVVMCILWQL
TKRLFLGSLREAEVERLNEQSWREVMEILFAITIFRQEFSVPFLAMVTALLLIKALHWLA
QKRVEYIETTPSVPKLAHVRIISFLGFLLLLDSLFLYSSIKFLIQTRQASVSIFFAFEYM
ILATTTVSTFVKYVFYVSDMLMEGQWEKKAVYTFYLELIRDLLHLSMYLCFFLVIFMNYG
VPLHLIRELYETFRNFKIRVADYLRYRKITSNMNDRFPDATPEELSASDATCIICREEMT
LAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGASSSGGQHGTWSDAPRQGSST
SSATQGPGVEMATDNLTPHQARLQAAAAAASIYEKSYVYPSANTLVWSPGNPVLPGSYAP
LADTMKVEHSGESPSIGHQQFAIPGGQSNLPFPQFPNCVFVPFQLPGANGNSGGGGSGSN
QNISDSQLEAQKKIIEQQIEVLQRQLQLLQMHEPKTEESSDIGLTTSSDSKGKGVASSSS
EE
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgcgaacatatgctggtctcagtttagtcacgacactagcagttatatat
catgcattcaacagcagaggccagttttatcctgctatggtttatttatcaacctctaag
atcagcttagtgttgcttctcaacatgggccttgtagttatgtgtatcttatggcaatta
accaaacggttattccttgggtctcttcgagaagctgaggttgagcggttgaatgagcaa
tcatggagagaggtcatggagatcctctttgcaatcactatctttcggcaggaattctct
gttccatttcttgcaatggttactgctctattgttaatcaaggctttgcattggttggcg
cagaagagggttgagtacattgaaacaaccccttccgttccgaagttagcgcatgttcgg
atcatttcatttctgggttttcttcttctgcttgattctctgtttttatacagttctatc
aagtttctgatccaaacacgacaagcttcagtttccatcttctttgcatttgagtacatg
atactggcaacaacaacagtgtcaacttttgtaaaatatgttttctatgtgagtgacatg
cttatggaagggcaatgggagaaaaaagctgtatataccttctacttggagctcatccga
gacttgcttcacttgtctatgtacttgtgcttctttcttgtgattttcatgaattatggt
gtacctctgcacttaatacgggagctttatgagacatttaggaattttaaaattcgtgtt
gctgattacttgcggtatagaaagatcacctcaaatatgaatgatagattcccggatgca
acccctgaagaactctctgcaagtgatgcaacatgtattatatgtcgtgaagagatgacc
ttagcaaagaagttaatttgtggacatctttttcacgtgcactgccttcgatcatggctg
gagaggcagcatacctgtccaacctgcagagcacttgttgtaccacctgaaaacggagca
agttcatctggagggcaacatggaacttggtcagatgctcctcgacaagggtccagcacg
agttcagctacacaaggtcctggtgttgagatggccactgataatttgacccctcatcag
gcgaggctgcaggctgctgctgctgcagcatcaatatatgagaaatcctacgtctatcct
tctgcaaacacattagtttggtctccaggaaaccctgtacttccagggtcttatgcgcca
ttggccgacaccatgaaggtggaacatagtggggaaagcccatccattggacatcaacag
tttgccattcctggtggacagtcaaacttgccctttccacaattcccaaactgtgttttt
gttcctttccagttacctggtgccaatggaaactcaggaggaggaggatcagggagtaat
cagaatatttcagattcccagttggaggctcagaagaagattattgaacagcagattgag
gtactgcaacgtcaacttcaactcttgcagatgcacgagccaaaaactgaggaaagctcg
gacattggtctcacaacctcatcagatagtaaaggaaagggcgttgcatcttcttcttct
gaagagtaa
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integrated database retrieval system
