KEGG   Gossypium raimondii: 105800051
Entry
105800051         CDS       T04129                                 
Name
(RefSeq) LOW QUALITY PROTEIN: WD repeat-containing protein RUP2
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
gra  Gossypium raimondii
Pathway
gra04120  Ubiquitin mediated proteolysis
gra04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    105800051
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    105800051
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:gra04121]
    105800051
Enzymes [BR:gra01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     105800051
Ubiquitin system [BR:gra04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    105800051
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     105800051
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_EML Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_DCAF12 Beta-prop_DCAF4 EIF3I Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd WD40_like Beta-prop_TEP1_C Beta-prop_NUP159_NUP214 NBCH_WD40 Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 105800051
NCBI-ProteinID: XP_012486390
LinkDB
Position
9:complement(43760115..43761775)
AA seq 411 aa
MGAFHWFDGSKPSHIASISISFEWAMNDFSSGFHPPAVPGHETKLSAEEKQPAARCEWDF
SLATVVSSTANATVSDTLGVIEFDPSNTILATGGIARKIRIYTLNSLLGPQEETVHFQGE
HQSIAFLDHTNACGNCIFTPAKLSSLRWKPGTGGRILGSGDYDGVVMEYDVETKVPIFER
DEHGGRRVWSVDYSHSDPFLGASGSDDGTMQMWDPRCGEVGGSVAKVQPTKSRSSVCCVE
FNPFGDALIAAGCADQKAYAYDVRKMVEPVHIFDGHTKTITYVRFLNAQTLVSAGTDGCL
KLWNIVDSRLLRTYKGHVNSRSFVGLSVWRHGGLLGCGSENNQVFVYDTRWGEPIWVHGF
EPMGRDSSDHHHAFVSSVCWRQVNEDQCTLVAGGSNGVLHVFVGKRKSDSE
NT seq 1236 nt   +upstreamnt  +downstreamnt
atgggagcctttcattggtttgatggttcaaaaccctcccatatagcctccatctccatt
tcatttgaatgggcaatgaacgatttctcctccggattccatccccccgccgtcccaggc
catgaaaccaaactatccgcagaagaaaaacaaccagccgcccgttgtgagtgggatttt
tcactcgccaccgttgtctcctccaccgccaacgccaccgtctctgacacccttggagtc
atcgaattcgacccctctaataccatcttagcaaccggagggattgcaaggaagattagg
atttacactttgaattctttgttggggcctcaagaagagactgtccattttcaaggtgag
caccaaagtattgcgtttctagaccatactaatgcgtgtggtaattgcatctttacccca
gctaagcttagtagccttaggtggaaacccgggaccggaggccgcatcttgggttccgga
gactacgacggtgtggtcatggagtatgatgtagagacgaaggtgccaatcttcgaacgt
gacgagcatggtgggaggcgggtttggagcgtcgactattctcattcggatccgttcctc
ggggcatccggctcggacgatggcaccatgcaaatgtgggacccacgctgcggcgaagta
gggggaagtgtggctaaggtgcagcccacgaagtcacgcagctcggtttgttgcgtggag
ttcaaccccttcggagatgcattgatagctgccggatgcgccgaccagaaggcctacgcc
tatgatgtaaggaaaatggtggaacccgtacacattttcgatggacatacgaaaaccata
acatacgttagatttctgaatgcccaaacactggtttccgctggaaccgacgggtgttta
aaactatggaatatcgttgattctcgtttacttagaacatacaaagggcacgtaaacagt
cggagctttgtggggttgtcagtgtggaggcatggagggttgcttggatgcggatcagaa
aataaccaggtgttcgtttatgataccaggtggggtgagcccatttgggtgcatggcttc
gagcctatgggtagagatagctccgatcatcaccatgctttcgtcagcagtgtgtgctgg
aggcaagtcaatgaagaccagtgcacacttgttgcaggtggttccaatggagttttacac
gtattcgtgggcaagaggaaatctgattcagagtag

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