Gossypium raimondii: 105800725
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Entry
105800725 CDS
T04129
Name
(RefSeq) exopolygalacturonase
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
gra
Gossypium raimondii
Pathway
gra00040
Pentose and glucuronate interconversions
gra01100
Metabolic pathways
Module
gra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
105800725
Enzymes [BR:
gra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
105800725
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
105800725
NCBI-ProteinID:
XP_012487472
UniProt:
A0A0D2S2L0
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Position
9:complement(48999346..49001186)
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AA seq
426 aa
AA seq
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MAFVTKARISLILLLCLVDRNGCERTGPFNPAEALVKAKNAAAGKLGPDVKTFNVLDYGA
KADGKTDSSINFIRTFKAACNFRGNAMMVIPKGDFLIGPIIFQGPCFNPSSLIIQANGIV
KAQADLSYFTGGADDTDWITFQSIKGLILSGTGTFHGQGAKAWKYNDCAHKSHCVRLAAN
FKFNKVNDAIINGINSIDPKGFHIMVTVCQNFRLLNLKLQAPGDSPNTDGIHISKSTVVK
IAHCVIGTGDDCVSMIHGSIDISVNKVICGPGHGFSVGSLGHYDDEADVNKIVVTNSSLT
DTTNGVRIKTYKTDSPSKASSIFFTDLIMNRVKNPIIIDQEYGNRRSTQTSKVSISDVRF
VNIKGTSISKVAVQFLCSKSNPCEGIQMNNIDLQYVGPPRDQQPFESNCTNAKVSYIGLQ
NPPPCR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcattcgtcactaaagctcgaattagcctcattcttctcttgtgcttagttgatcgc
aatggttgcgaacggacaggtccgtttaatccagccgaagctttagttaaagctaaaaat
gccgctgccggtaagttaggccctgatgttaaaacttttaatgtgttggactacggtgca
aaggccgacggaaagaccgatagctcgattaattttataaggacattcaaagctgcatgc
aatttccgtggaaatgctatgatggtgatccctaaaggggacttcttaatagggccaatc
atatttcaagggccttgcttcaatccatcttctctaattattcaagctaacggaatagtg
aaagcacaagctgatttgtcgtattttaccggaggagccgacgatacggattggattacg
tttcaaagcatcaagggattgattctaagcggcaccggtacattccatggccaaggtgct
aaggcatggaaatacaatgattgtgcccataagtcacattgtgtccgtttagccgcaaat
ttcaagttcaataaggtaaatgatgcaatcatcaatgggataaattccatagatccgaaa
gggttccacataatggtcaccgtttgtcaaaactttaggcttttaaaccttaagttgcaa
gcccctggagatagccccaacactgatggcattcacattagtaaatcgactgtagtgaaa
atagcccattgtgttattggcactggcgatgactgtgtctcgatgatccatgggtctatc
gacatcagtgtcaacaaagtaatttgtggcccaggtcatggtttcagtgttggtagtctc
ggccattacgatgacgaggcagatgttaataagatcgtcgtgacaaacagctcgctaaca
gacacaacaaacggggttcgaatcaaaacatacaaaaccgattcccctagtaaagcttcg
agcatatttttcacagacctaattatgaatcgagtcaagaaccctattatcatagaccaa
gaatacggaaatagacgtagtactcagacatcgaaagtgagtattagcgacgttcgattt
gtgaacatcaagggaacttcaataagcaaagttgcggtacaattcctttgcagtaaatcg
aatccttgtgaaggcattcaaatgaataatatcgacttacagtacgtcggtccaccacgt
gaccaacagcctttcgaatctaattgtactaatgccaaggtttcctacattgggttacaa
aatcctccgccgtgccgttag
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