Gossypium raimondii: 105801732
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Entry
105801732 CDS
T04129
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105801732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105801732
03012 Translation factors [BR:
gra03012
]
105801732
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105801732
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105801732
Translation factors [BR:
gra03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105801732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
ATPase
Dicer_dimer
AAA_30
PhoH
AAA_16
AAA_11
Motif
Other DBs
NCBI-GeneID:
105801732
NCBI-ProteinID:
XP_052479761
LinkDB
All DBs
Position
11:62684066..62693211
Genome browser
AA seq
1196 aa
AA seq
DB search
MSCYSAIFQGYLRTTAMSLRPASLQLNNSPKILLKPCSFSFVPRTQSPGSFRRLHLRNGL
VRCSKSGTAASSSRTIALDWRNVALPYSELQSSNYGRYAYQDVSGDDSDHEFGSPQSQSQ
MGASTLDNIDEWRWKLTMLLRNKDEQEVVSRERKDRRDFEQLSALATRMGLNSRQYAKVV
VFSKLPLPNYRSDLDDKRPQREVVLPFGLQRDVDLHLKAYLSHKAMSSGRSLDKPLIRSN
SGGIPAADEVPVNPEPFAQNSVALERILRRRSLQIRDKQQEWQESPEGQKMLEFRRSLPA
YKERDALLNAISQNQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSIICTQPRRISA
MAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRDLRGVSHVI
VDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSYYGGAPTIHIPGFTYP
VRAHFLENILEMTGYRLTPYNQIDDYGQEKMWKMQKQAQSFKKRKSQLTSAVEDVLEDAD
FRGCSLRTRESLSCWNPDSIGFNLIEHVLCHIVRKERPGAILVFMTGWDDINSLKGQLQA
HPLLGDPSKVLLLACHGSMPSSEQRLIFEKPEDGVRKIVLATNMAETSITINDVVFVVDC
GKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPKCVYDTFADYQLP
ELLRTPLQSLCLQIKSLELGGITEFLSRALQPPELLSVQNAVEYLKIIGALDENENLTVL
GRNLSMLPVEPKLGKMLILGAIFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAETAKAQFA
GQEYSDHIAVIRAYEGWKEAEREQSGYEYCWKNFLSAQTLKAIHSLRKQFFYLLKDAGLV
DQNVENCNKWSHDEHLVRAVICAGLFPGICSVVNKEKSIAMKTMEDGQVLLHSNSVNAEV
PKVPYPWLVFNEKVKVNAVFLRDSTGVSDSILLLFGGNISRGGLDGHLKMLGGYLEFFMK
PALAVMYLSVKRELEELIQRKLLDPTLDMHSSNELLSAVRLLVSEDRCEGRFVFGRQVTL
SSKKTATVKTPGKSEADNSKNHLQTVLTRAGHGPPTYKTKQLKNNQFRSTVIFNGLDFVG
QPCSSKKLAEKDAAAQALLWLRGEDHSTSRDIDHASLLLKKSKSRRKTSVSDAKWS
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgttactcagctatatttcagggttatctcaggacaaccgccatgtctctgcga
cctgcttccctccaacttaacaactcccctaaaatccttttaaaaccatgttcattttcc
tttgtccccaggacccaatcccctggttctttccggcgtttgcatttgaggaatggcctc
gttaggtgctcaaagtctgggactgctgcttcttcttccaggactattgccttggattgg
aggaacgttgccttgccttattcggagctgcaaagctctaattatggccgttatgcttac
caggatgtttccggcgatgattcggaccatgaatttgggtctccacagtctcagagtcaa
atgggtgcttcaacgcttgataatattgatgaatggagatggaaattgactatgcttctt
cgtaacaaagatgagcaagaggtagtatctagggagaggaaggataggcgtgactttgag
caactttcagctctggcaacgagaatgggtttaaatagtcgtcaatatgcaaaggtggtt
gtttttagtaaacttccattgccgaattatagatctgatcttgatgataagcgtccacaa
agagaggtggtcttaccttttggcttgcaaagagatgtagaccttcacctcaaagcttac
ctttctcataaggctatgagcagtggtaggtctctggataagcccttgattagatcaaat
agtggtggaatacctgctgcagatgaagtacctgttaatccagagccctttgcacagaat
agtgttgccttggagagaattcttcgacggagaagtttgcaaatacgtgataagcaacaa
gaatggcaggagtctcctgaaggccaaaagatgcttgaatttcgtagaagcttgcctgca
tataaagagagagatgcattgctaaatgctatctcacagaatcaggtggttgttgtctct
ggcgaaactggttgtggtaaaaccacacaacttcctcagtacatattagaatctgagatt
gaagctgctcgtggagcttcctgtagtattatatgtactcagcctagaagaatatctgct
atggctgtttctgaaagagttgctgctgaaagaggggagaaattgggagaatctgtcggc
tataaagtacgccttgagggaatgaaagggagagacactcgcctccttttttgtacaact
ggaattttacttaggcgactacttgttgacagagatttgagaggtgtaagtcatgttatt
gttgatgagattcatgaacgaggaatgaatgaagattttcttcttattgtgttgaaagat
ctccttccacgtcggccagagttgaggttgattttgatgagtgcaaccttaaatgctgaa
ctcttttcttcttactatggtggtgccccaacaatccatattcctggttttacatatcct
gtacgagcacattttctggagaatattctagagatgactggatacaggttaactccatat
aatcaaattgatgattatggtcaagaaaagatgtggaaaatgcagaagcaggcccaatct
tttaaaaagaggaagagtcagctaacttctgctgttgaggatgtgcttgaagatgctgat
ttcaggggatgtagtttacgcacacgagaatctttgtcctgttggaatcctgactcaatt
ggcttcaatctcattgagcatgttctttgccacatagtgaggaaagagaggcctggtgct
attttggttttcatgactggttgggatgacataaattctctaaaaggtcagctccaggca
catcctctcctaggtgaccctagcaaggtgttgttgcttgcatgccatggttccatgcct
agctctgagcagaggttaatatttgaaaagccagaagatggagtgaggaaaatagttcta
gctactaatatggctgagactagcatcaccatcaatgatgtggtttttgtggttgattgt
ggaaaggcaaaagaaacatcctatgatgcattaaataatactccttgtttgcttccatct
tggatatcaaaggctgctgcccggcaaagaaggggaagagctggtcgtgttcaacctggc
gagtgttaccatctttatcccaaatgtgtttacgatacttttgctgattatcaacttcca
gagcttttaaggacaccattgcagtctttatgtttgcaaatcaaaagtctagagcttgga
ggtatcaccgagttcctttctagggcattgcagcctccggaacttctgtcggtacaaaat
gctgttgaatatctgaagattattggagctttagatgaaaacgagaatttgacagtgcta
ggacgcaacttgtcaatgcttccggttgagcctaaacttggaaaaatgctgatactgggt
gctattttcaactgtttggatccaataatgactgttgttgctgggctcagtgtccgtgat
ccattcctgatgccatttgataagaaggatcttgctgaaacggcaaaagcccaattcgct
ggccaggaatacagtgatcatattgcagttatccgagcctatgagggttggaaagaagct
gaaagggagcagtctggttatgagtattgttggaagaattttctttctgcacaaactctc
aaggctattcactctctacgaaagcagttcttctatttgctcaaggatgctggtctagtt
gatcaaaatgtagaaaactgcaataagtggagccacgatgaacatcttgtcagggcagtt
atttgtgctggcttgtttccagggatatgctctgttgtgaacaaagagaagtcaattgca
atgaaaacaatggaggatggtcaagttcttttacactcgaattcggtgaatgctgaagtt
cccaaagttccatacccttggctggttttcaatgaaaaggtaaaagtgaatgcagtattc
ctccgcgattcaactggtgtttctgattccatactgctcttatttggagggaacatctct
agaggtggactagatggacatctgaagatgttgggaggatatttggagttcttcatgaaa
cctgctttagctgttatgtatttaagcgtgaaaagagagctagaagaactaattcagagg
aaacttttggatcctacattagacatgcattctagcaatgagctcctctcggcagtaaga
ttgctggtctcagaagatcgatgtgaaggtagatttgtctttggccgtcaggtgacgttg
tcttcaaagaagacagccactgttaaaacaccaggtaagagcgaggctgataattcgaag
aatcatctgcaaacagtccttaccagggctggacatggaccacccacttacaagacaaag
caactaaagaacaaccagttccgatctacagtcatctttaatgggctggattttgttggg
cagccttgtagcagcaagaaacttgcagaaaaggatgcagctgctcaggctttactgtgg
ttgaggggtgaagaccattcaacttcccgagatattgaccatgcctcattgcttcttaaa
aagagcaaaagccggaggaaaacttcagtcagtgatgctaagtggagttaa
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