Gossypium raimondii: 105801865
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Entry
105801865 CDS
T04129
Name
(RefSeq) nuclear pore complex protein NUP98A isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
gra
Gossypium raimondii
Pathway
gra03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105801865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105801865
03036 Chromosome and associated proteins [BR:
gra03036
]
105801865
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
105801865
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
105801865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
105801865
NCBI-ProteinID:
XP_012488652
UniProt:
A0A0D2SCM0
LinkDB
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Position
11:61824506..61831722
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AA seq
1139 aa
AA seq
DB search
MFGSTSPFGQSSSSPFASQSVFGQTNNANSNPFAPKPSFGSITPFGSQTGGSIFGGTSTG
VFGSAQSSSPFSSTTAFGASSSPAFGSSMPAFGSSSTPAFGSSASSFGGSSVFGQKPAFG
FGSTTTQSSPFGSTTQQSQPAFGSGIFGSSVPFGSSTPAFGATSTSAFGATSTPAFGATS
APAFGATSTPSFGATSAPAFGGTSTPAFGSMSTPAFGATSTPAFGSTGSPAFGSTGTAFG
VSNAPVFGTGGTFGASSTPAFGTSSTPAFGGSSTPAFGASSSPSFSFGSAFGQSTPAFGS
FGATSTPAFGSTSTPAFGATSTPAFGSTSIPAFGATSTPAFGSTGSPAFGSSGTAFGMSN
ASVFGTEGTFGASSTPAFGTSSSPAFGASSTPSFSFGSSPTFGQSTPAFGSSPFGTTAFG
AQSSPFGSQSSTPAFGSTSFGQSPFGGQRGGSRVAPYSSTTEADGGSGTQPAGKLESISA
MPVYKDKSHEELRWEDYQLGDKGGPNPASQPSAGIGFGVSTSPSNPFSTSSTFGQTSANP
FSSTSTNPFSLKPPSFNSIGFTTSATTSNPFQSTSSSLFGQTSSMTTSIFSSSSTPTFGT
GSSLFSSSVTPSFSTSLSIFGTSVTPATTPTFATGLNFSSSQTSPLFSSTPAIGQTGNAF
GQVTSTFGQNTTNFGQTSIFNTPSTGFGGNMFSSSLSFAPSSSPAAFGSTTPPFSSPFQP
AQTSGAFSFSNFGQSQPGGGSSIFGQSNIGLSYVSSTQSAAVAQPSTIANPYGTLPAMPQ
ISIGRTGAAPSVQYGISSMPVVDKPAPVRILPLLTSRYLSQRRIRLPTRKYHPNNDSPKI
PFFSDDEETPCVPKAGAVFIPRENPRSLVIRPTKSWPSRASAEKASPLKDASTPPHENGK
FSNDGSNAEDKDENPAENGLVKERIHIIRSNQKANGVHDDYSTEKDDLYMTISGHRAGEA
AIVYEHGADIEALMPKLRRFDYFTEPRIQELAAKERAEPGYCRRVKDFVVGRHGYGSIKF
SGETDVRRLDLESLVQFNNREVIVYLDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTRQQY
TEGPRVEKYKNMLKRKAEEQGAEFLSYDPITGEWRFKVNHFSTYKLEDGDDDGEDKKHL
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgtttggttcaactagcccttttgggcaatcatcaagtagcccatttgcttcccaatct
gtttttggccagaccaacaatgcaaatagcaatccatttgctccaaaaccttcctttggt
agcattaccccttttggatcacaaacaggtggttcaatatttgggggtacttctactgga
gtgtttggctccgcccaatcttcttctcccttttcctcaacaactgcctttggtgcttca
tcatctccagcttttggaagttccatgcctgcttttggatcttcttctactcctgcattt
ggcagttcagcatcatcttttggtgggtcttctgttttcggtcagaagcctgcatttggc
tttgggtctactactactcaatcaagtccttttggaagcacaacgcaacaatcacaacct
gcatttggtagtggtatatttggttcctctgtaccttttggttccagtactcctgccttc
ggtgccacgagcacctctgcttttggtgccacaagtacccctgcctttggtgccacgagt
gcccctgcttttggtgccacgagtaccccttcttttggtgccacgagtgcccctgctttt
ggtggcacaagtacccctgcctttggttccatgagtactccagcctttggtgccacaagc
acccctgcctttggttcaactggaagtccagcatttgggagcactggaactgcatttggt
gtgtccaatgccccagtctttggaacaggtggcacatttggagcatcaagcacacctgct
tttggcacttccagcactcctgcatttgggggttcgagcactcctgcttttggagcatct
tcaagtccatcattcagctttgggtcagcatttgggcagtcaacaccagcatttggtagc
tttggtgccacgagcactcctgcctttggttccacaagcacccctgcctttggtgctacc
agcaccccggcctttggttccacaagcatccctgcctttggtgctaccagcactccggcc
tttggttcaactggaagtccagcattcgggagcagtggaactgcatttggcatgtctaat
gcctctgtctttggcacagaaggcacatttggagcatcaagcacacctgcttttggcact
tcaagcagtcctgcttttggagcatcttctactccttccttcagctttgggtctagccca
acttttggccagtccacaccagcattcggtagtagtccatttggaaccactgcatttgga
gcccagagttctccttttggaagtcaatcttctacaccagcatttggaagcactagcttt
ggccaatcaccttttgggggtcaacgtgggggaagtagagtagctccgtactcttctact
actgaagcagatggagggagtggtacacagccagctggaaaattggagtcaatatcagca
atgcctgtttacaaagataaaagtcacgaggagttgagatgggaggattatcagttagga
gataaaggtggaccgaatccagcttctcagccttctgcagggattggctttggtgtgtca
acttcaccttcaaatcctttcagcacctcttcaacatttggtcagacatctgcaaatcct
ttttccagcacaagtaccaatccatttagtttaaaacctccatcctttaatagtataggt
tttacaacctcagcaactacatcaaatccttttcaatcgacttcatcaagcctttttggg
caaacttcatcaatgacaacttcaatatttagttcatcttccactcctacatttggaact
gggtcttctctttttagttcatctgtcactccttccttttcaacttcgttatccattttt
ggcactagtgtaactccggcaacaacgcctacatttgctactggtttaaattttagcagc
agtcagacatcccccctgttcagttctacccctgcaattgggcagacaggcaatgctttt
gggcaggtgacctctacatttggacagaatactactaattttggtcaaacaagcattttc
aacacaccttccactgggtttggtgggaatatgttttcaagctcactatctttcgctcct
tctagcagcccagctgcctttggctcaacaactccccctttttcttctccttttcagcca
gctcagactagtggtgctttcagtttcagcaattttggtcagtcacaaccaggtggtggt
tcaagcatttttggtcagagtaacattggcttgtcgtatgtgtcttctacacagagtgct
gctgtagcgcaaccctcgactattgcaaacccctatggaacactccctgctatgccacaa
atctcaattggtcggactggggctgccccatctgttcaatatggaatttctagcatgcct
gttgtggacaaacctgctcctgttagaatattgcccttattgacttctcgatacttgtcg
caaaggcggattaggttgcctacaaggaaatatcatcctaataatgatagtccgaagatt
ccatttttcagtgatgatgaagagacaccctgcgtgcctaaggccggtgctgtttttatt
cctagggaaaacccaaggtctctggtcattcgccccacaaaaagttggccgtccagagct
tctgcagagaaggcatcaccattgaaggatgcatccacaccgccgcatgagaatggcaaa
ttttctaatgatggctccaacgctgaggataaagacgaaaatcctgctgaaaatggcctt
gtgaaggagcgaattcatatcatcagaagtaaccaaaaggctaatggagtccatgatgat
tattctactgagaaagatgacttgtacatgacgatcagtggtcacagagctggtgaagca
gctattgtctatgagcatggggctgacatcgaggctctaatgccaaagctccgccgtttt
gactactttacagaacctcgaatccaagaactagcagcgaaggaaagggctgaaccaggg
tactgtcgccgtgtaaaggattttgtcgttgggcggcatggttacggaagcatcaaattc
tcgggtgagaccgatgtgagacgtcttgatctggagtcccttgtccaattcaacaaccgt
gaggtgattgtttacttggatgacagcaagaaacctcctgtcggacaaggtcttaataaa
cctgctgaggtaacacttctcaacattaaatgcttcgataaaaagaccaggcagcagtat
acagaagggccacgagtcgagaaatacaagaacatgcttaagaggaaggcagaggagcaa
ggagctgagtttctctcctatgatcccatcacaggagaatggaggttcaaggtcaatcac
ttcagcacatacaagttggaagatggagacgatgatggtgaagataaaaagcacttgtaa
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