KEGG   Gossypium raimondii: 105802455
Entry
105802455         CDS       T04129                                 
Name
(RefSeq) protein transport protein SEC13 homolog B
  KO
K14004  protein transport protein SEC13
Organism
gra  Gossypium raimondii
Pathway
gra03013  Nucleocytoplasmic transport
gra04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    105802455
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    105802455
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gra03019]
    105802455
   04131 Membrane trafficking [BR:gra04131]
    105802455
Messenger RNA biogenesis [BR:gra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     105802455
Membrane trafficking [BR:gra04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    105802455
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    105802455
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    105802455
SSDB
Motif
Pfam: WD40 Beta-prop_IFT122_1st Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR35_TULP_N Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_WDR3_2nd Beta-prop_Vps41 ANAPC4_WD40 WD40_Gbeta WDR55 Beta-prop_WDR19_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd WD40_RFWD3 WD40_2 Beta-prop_HPS5 Beta-prop_NOL10_N
Other DBs
NCBI-GeneID: 105802455
NCBI-ProteinID: XP_012489555
UniProt: A0A0D2QNG5
LinkDB
Position
11:complement(57689399..57691666)
AA seq 301 aa
MPAQKIETGHEDALHDVAMDYYGKRLATASSDTTIKIIGITGSSSQQLAVLHGHKGPVWG
VAWAHPKFGSILASCSYDGQVIIWKENNQNEWLQAHVFNDHKSSVNSIAWAPHELGLCLA
CGSSDGNISVFTARDDGSWDTTRIEQAHPVGVTSVSWAPSTALGAFIGSGLLDPVQKLAS
GGCDNMVKVWRLYNGSWKMDYSPALQMHTDWVRDVAWAPNLGLPKCTIASASQDGKVIIW
TCGKEGEQWKGTILKDFKTPVWRISWSLTGNLLSVADANNNVTLWKETVDDEWQEVNAIE
P
NT seq 906 nt   +upstreamnt  +downstreamnt
atgcctgcacagaaaatcgagacaggtcatgaggatgcactccatgatgttgccatggat
tattatggaaaacgattggcgactgcttcatctgatactaccattaagatcattggcata
actggatctagttcacagcaacttgctgttctacatggccataaaggacctgtttggggg
gttgcttgggcacatcccaagtttggatcaatccttgcatcgtgttcttacgatggccag
gtgataatctggaaggaaaataatcaaaacgagtggctgcaggcccatgtttttaatgat
cataagtcatctgtgaactccattgcatgggcaccccatgagcttggcctctgtttggcc
tgcgggtcttctgatgggaatatatcagtctttactgctagggatgatggtagttgggat
accaccaggatagagcaagctcaccctgttggagtaacctcagtctcgtgggcaccatca
accgcactcggtgctttcattggatctggtctactggatcctgttcagaagctggcctct
ggtggatgtgacaacatggtcaaagtatggaggctgtataatgggagttggaagatggac
tacagccctgccctccagatgcacactgattgggtgcgggatgttgcttgggcacccaac
ttggggctcccaaaatgcacgattgcaagtgcttctcaggatgggaaagttattatatgg
acttgcggtaaagaaggggagcaatggaagggtacgattttgaaggatttcaagacccca
gtttggaggatctcatggtcgctgactggaaacttattgtctgttgctgatgccaataac
aatgtcacattgtggaaagaaacggttgatgatgagtggcaagaagtgaatgctattgag
ccatga

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