Gossypium raimondii: 105803667
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Entry
105803667 CDS
T04129
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
gra
Gossypium raimondii
Pathway
gra03020
RNA polymerase
gra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105803667
09124 Replication and repair
03420 Nucleotide excision repair
105803667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gra03021
]
105803667
03400 DNA repair and recombination proteins [BR:
gra03400
]
105803667
Enzymes [BR:
gra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105803667
Transcription machinery [BR:
gra03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105803667
DNA repair and recombination proteins [BR:
gra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105803667
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
105803667
NCBI-ProteinID:
XP_012491468
UniProt:
A0A0D2SMR9
LinkDB
All DBs
Position
11:44946483..44954936
Genome browser
AA seq
1846 aa
AA seq
DB search
MDLRFPYSPAEVAKVRVVQFGILSPDEIRQMSVVQIEHSETTERGKPKVGGLSDPRLGTI
DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK
FKQALKIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDAEEPVKKSRGGCGAQQPKLTI
DGMKMIAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS
EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
LLRTSAWHSESETGSITPGDTQVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISKAKDDVKQLIVKAQNKDL
EPEPGRTMMESFENKVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKSEFDRVFRYKIDDENWNPTSYMLPEHIEDLRTIQELRDVFDAEVNKLEADRY
QLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFKVDFRRVSDLHPVEIVDSVDKLQERLKVV
PGADPLSVEAQKNATLFFCILLRSTLASKRVLQEYRLTKEAFEWVIGEIESRFLQSLVAP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
SPEASKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEE
VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI
MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASKFDEADGYK
TGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD
YLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGT
PYHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP
TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKY
SPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPD
YSPSSPQYSPSAGYSPSAPGYSPTSTSQYTPSNKDGRSNKDDRSKR
NT seq
5541 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcgattcccttactctcccgcggaagtcgccaaggttcgcgtggtccagttc
ggcatcctcagccccgacgaaattcggcaaatgtcagtggtgcagattgagcacagtgaa
acgacggagagaggaaaacccaaagtaggaggtttaagtgacccgcgactgggcacgatt
gacaggaaattgaagtgcgagacgtgtacggctaacatggcagagtgtccagggcatttt
gggcacttggagcttgccaagcctatgtttcatattgggtttatgaaaactgtgcttagt
attatgagatgtgtctgcttcaattgctccaagattctcgctgatgaggaagatcataaa
tttaagcaagctttgaagataaagaatccaaagaacagactaaaaaagattttagatgca
tgcaagaataaaactaaatgtgagggtggtgatgaaattgatgtccaaggtcaagatgcg
gaggaaccggtaaaaaagagccgtggtggctgtggtgctcagcaaccaaagttgactatt
gacggtatgaagatgattgctgagtacaaggcccaaaggaagaaaaatgatgacccggaa
caacttcctgaacctgtggaaagaaaacagactctaacagctgaacgggttcttagtgtc
ttaaagaggataagtgatgaggactgccaactattaggtttgaatcccaagtatgcccgt
ccagattggatgattcttcaagtacttccaatacctccacctcctgtgagaccctctgtg
atgatggatacatcctctaggagtgaggatgacttaacacatgcattggctatgatcatt
cggcacaatgagaacttgaggagacaggagaggaacgggtcacctgcacatatcatatct
gaatttgcacagttgttgcaatttcatgttgcaacatattttgacaatgagttgcctgga
cttccaagggctacacagagatctgggagacctataaaatctatttgtagtaggcttaag
gcgaaagagggccggattaggggtaacttgatggggaaaagggttgacttttcagctcga
acggtaattacaccagatccaaatatcaatattgatgaacttggagtaccttggagtatt
gctttaaatcttacatatccagaaactgtgacaccatataacattgaaaggttgaaagaa
cttgtggaatatgggcctcatcctccacctggaaagactggtgctaagtacatcataaga
gatgatggacaaaggcttgatcttcgttacctaaagaaaagcagtgatcatcacctagaa
cttggttataaggtggagcggcatttaaatgacggggattttgtcctttttaatcgtcaa
cctagtctccataaaatgtcaatcatgggccacagaattaggatcatgccatactcaacg
ttccgtctaaatttgtcagttacttcaccatacaatgctgattttgatggtgatgaaatg
aatatgcatgttcctcaatcatttgagacaagagctgaggttttggagctcatgatggtg
cctaagtgcattgtgtctcctcaatcaaataggccagttatggggattgtccaggataca
cttttaggatgccgtaaaatcaccaagagggataccttcatagaaaaggatgttttcatg
aatatattgatgtggtgggaagactttgatgggaaggttcctgcacctgcaattctaaag
ccacgaccactttggacggggaagcaggtttttaatcttatcataccaaaacagataaat
ctattgagaacttctgcatggcattcagaaagtgaaactgggtctatcacccctggggat
actcaagtgcgaatagaaaaaggggaggtgctatctggcactctttgcaagaaaacactt
ggaacatcttctggaagtcttatacatgtaatttgggaagaggtaggtccagatgcagcc
cggaaatttttgggacatacacaatggcttgtcaattattggctgctgcagaatgccttt
agtattggtatcggggatacaatagctgatgcatcaacgatggaaaaaattaatgaaacc
atttctaaagccaaagacgatgtgaaacagcttattgttaaagcccaaaacaaggattta
gagcctgaacctggaagaactatgatggagtcctttgaaaacaaagttaaccaggtgttg
aataaagctcgtgacgatgcaggaaacagtgcacaaaaaagtttgtctgaaagcaataac
ctgaaggcgatggttactgcaggatcgaagggaagtttcattaacatatcccaaatgaca
gcttgtgttggtcagcagaatgttgagggaaagcgaataccatttgggttcatagatcgt
acattgcctcattttaccaaggacgattatggccccgaaagtcgtggttttgtggagaac
tcttacctgcgtggtttgaccccacaagagttcttttttcatgccatgggtggtagagaa
ggtctcatagatactgcagttaagacttctgagactgggtacatacagaggcgactcgtg
aaggctatggaggatattatggttaaatatgatggaactgtgaggaactcattgggggat
gttattcaattcctctacggtgaagatggtatggatgctgtatggatagaatctcagaag
ctggattctttgaagatgaagaaatcagaatttgatagggtcttcagatataaaatagat
gatgaaaactggaatccaacttcttacatgttaccagagcatattgaagacttgagaacc
atccaagaattgcgtgatgtgtttgatgctgaagttaataaacttgaagctgatagatac
cagcttggaacagagattgcagtcacaggtgatagtaattggcctttgcctgttaacttg
aagaggcttatctggaatgcacagaagactttcaaggttgactttcgaagggtgtcagat
ttgcatccagtggaaattgtagattctgttgataagctccaggaaaggttaaaggttgtt
ccaggtgcggatcctctgagtgtggaagcccaaaagaatgctaccctcttcttttgcatt
ttgctccgcagtactttggctagtaaaagggtgttgcaggagtatagattgacgaaagaa
gcatttgagtgggttattggagaaatagagtcacggttcttacagtccctagtggcaccc
ggtgagatgataggttgtgttgctgctcaatcaattggtgagcccgctactcaaatgact
ctcaacaccttccactatgctggtgtgagtgcaaagaatgttacccttggtgtccccagg
ttgagggaaattattaatgtagccaagaaaatcaagacaccttctctttctgtctacctc
tctcccgaagcaagtaaaactaaggagaaggccaagaatgtccagtgtgctttagaatac
actactcttcggagtgttacgcacgctaccgaagtatggtatgatccggatccaatgagc
acaattattgaggaggatattgacttcgttaagtcttactatgaaatgccagatgaagag
gttgcaccagaaaagatctccccttggctgcttcgaatagagttgaatcgtgagatgatg
gtcgataagaaattgagtatggctgacatagctgagaagatcaacctggaatttgatgat
gatttgacttgcatatttaatgatgacaatgcagagaagttgatcttacgtatccgcatc
atgaatgatgaagccccaaagggtgaattgaatgatgagtctgctgaggatgatgtgttc
ttgaagaagattgagagtaacatgctgacagaaatggcccttcgaggtatcccagacatc
aacaaggtgttcattaaacatagtaaagcaagcaaatttgatgaggctgatgggtataag
actggggaggagtgggtgctggatacagaaggtgtcaatctcttggctgtcatgtgccat
gaagatgttgatgcaaggagaacaacaagcaatcacttgattgaagttattgaagttctt
ggaatcgaagcagttcgtcggtccttgttggatgaattgcgggttgtgatatcgtttgat
gggtcttatgtgaattatcggcatctagctatcctttgtgatacaatgacctatcgtggt
cacttgatggccatcacccgtcatggcatcaaccgtaatgatacagggcctatgatgagg
tgctcatttgaagaaactgttgatattctccttgatgctgctgtttatgccgagtcggat
tatttgaggggtgtaacagagaatataatgttgggccagcttgcaccaattggcacggga
gactgtgccttgtatctcaatgatgagatgttgaagaatgccattgaacttcagctacct
agttacatggaaggtctggaatttggcatgacacctgcacgttctccagtgtcaggaact
ccttatcatgaaggcatgatgtctccaagttacttgctgagcccaaatctccgtctctca
cccatttcagatgcacagttctcgccttatgttggtggaatggcattctctcctacgtca
tcccccggttacagcccatcatctcctggatacagtccgtcatcacctggttacagtcct
acctctcctggttacagtcctacatctcctgggtacagtcccacctctcctggttacagc
cccacatcacctacttacagtcctagctcaccaggatacagtccgacaagtccagcctac
tctcctaccagcccctcatattctccaacctcaccaagctatagccctacctctccaagt
tacagccctacatctccaagttacagtcccacatcccccagttacagtcccacttcacct
agctacagccccacttcacccgtatatagccccacttctcctgcatatagccccacttct
cctgcatatagccccacttctccatcgtacagccccacatctccatcatacagccccaca
tctccttcgtacagccccacatctccttcctatagccccacatctccttcatatagcccc
acttcacccgcttatagccccacttctcctgggtacagtccaacctcaccaagttacagt
cccacatcaccaagctatagccctacctctccaagttacaacccgcagtcagccaagtac
agtccgtctctggcatactcaccaagtagtccaaggttgtctccttccagtccttacagt
ccaacatcacctaattacagtccaacatcaccatcatactcaccaacttctccatcttat
tccccttcaagtccaacatacagtcctagcagcccatacaactctggagtgagcccagac
tacagcccaagctcgccacagtacagtccaagtgctgggtattctcctagtgcccctgga
tattcaccaacatcaactagtcagtacactccaagcaacaaggatggtagaagcaataag
gatgacaggagtaaacgataa
DBGET
integrated database retrieval system
