Gossypium raimondii: 105803843
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Entry
105803843 CDS
T04129
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
gra
Gossypium raimondii
Pathway
gra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105803843
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gra01009
]
105803843
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105803843
03036 Chromosome and associated proteins [BR:
gra03036
]
105803843
Protein phosphatases and associated proteins [BR:
gra01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
105803843
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
105803843
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
105803843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_RIG_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_EML
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_NUP159_NUP214
ComGF
Motif
Other DBs
NCBI-GeneID:
105803843
NCBI-ProteinID:
XP_012491742
LinkDB
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Position
7:complement(51305058..51311723)
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AA seq
520 aa
AA seq
DB search
MINGGSETAVAPVGGSQPLDWKFSQVFGERTAGEEIQEVDIISAIEFNRNGDHLATGDRG
GRVVLFERTDTQDHVGHRRDLEKMDYPINRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN
KIRWCQSSNGALFLLSTNDKTIKLWKVQEKKVKKVCNMNVDSTKAMGNGPIVGSSISTSS
KQHIANGGCTSNDFSFPTGGFPSLHLPVVVVVNPECLFVTSHETNLMARCRRIYTHAHDY
HINSISNNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPTH
CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEGQEAPGSRSFFTEIIASISDIKFAKDGR
HILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGNGLRVA
TGSYSNLFRVFGCSEGSTEATTLEASKNPMRRQGQATSRPSRSLGNLSGVVRRVKGADNS
GVDANGNAFDFTSKLLHLAWHPTENSIACAASNSLYMYYA
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgatcaacggcggttccgaaacagccgtggctccggtgggaggatcgcaaccgcttgac
tggaagttctctcaggtgttcggagaacggacggccggagaggaaattcaggaagttgat
atcatatctgcaattgaattcaatagaaatggcgatcaccttgctaccggtgatcgtggg
ggtcgggtggttttgtttgaaaggactgacactcaagaccatgttggacatcgaagagat
ctagagaagatggattatccaatcaataggcatcctgagtttcgctataaaacagagttt
cagagccacgaacctgagtttgactatctgaagagcttggaaattgaggagaaaattaac
aaaattaggtggtgccagtcatctaatggtgctctttttcttttgtcgacaaatgacaaa
acaatcaagttatggaaggtacaagagaagaaagtcaaaaaagtatgtaacatgaacgtg
gactcaaccaaagccatgggaaatggtcctattgttggttcaagtatctcaacaagctcc
aaacaacacattgctaatggaggatgcacaagcaatgacttctcattcccaactgggggt
ttcccatctttgcatttgcctgtggtagttgttgtgaatccagaatgcttatttgtaacc
agtcatgagacaaaccttatggccagatgtcgaagaatatatactcatgctcatgactat
catatcaattccatatccaataacagtgatggtgaaacttttatttcggcagacgacctg
cgaatcaatctttggaacctggaaattagcagccaaagttttaacattgttgatgtgaaa
cctgcaaacatggaggatttgactgaggtgataacttcagcagaatttcatcctacacac
tgtaatatgttagcatatagtagttctaagggttcaattcgtcttattgatatgcgacaa
tctgcattatgtgatactcacagcaaattgtttgagggacaagaagctccaggttccagg
tctttcttcacagagatcatagcatcaatctccgacattaagtttgccaaagatggaagg
catatactaagtcgtgactatatgacccttaagttgtgggacataaatatggattctggt
ccggttgcaactttccaggttcatgaatatcttagacctaagctttgtgatctgtatgaa
aatgattccatctttgacaaatttgaatgttgtctaagtggaaatggacttcgagtggct
actggttcctacagcaatctgtttcgggtgtttggttgttctgaaggtagtacggaagca
acaacactggaagccagcaaaaaccccatgaggagacaaggtcaggcgacatcaaggcct
tcaagatctcttggtaatctctctggtgttgtccgacgagtgaaaggagcagataactcg
ggagttgatgcaaatggaaatgcttttgatttcacttcgaagctgctacacttagcatgg
catccaaccgagaactctattgcctgtgctgcatccaacagtctttacatgtattatgca
tga
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