Gossypium raimondii: 105804403
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Entry
105804403 CDS
T04129
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105804403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105804403
03016 Transfer RNA biogenesis [BR:
gra03016
]
105804403
Enzymes [BR:
gra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
105804403
Messenger RNA biogenesis [BR:
gra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
105804403
Transfer RNA biogenesis [BR:
gra03016
]
Prokaryotic type
tRNA degradation factors
105804403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
DUF6293_C
Motif
Other DBs
NCBI-GeneID:
105804403
NCBI-ProteinID:
XP_052479788
LinkDB
All DBs
Position
11:complement(17783140..17797476)
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AA seq
941 aa
AA seq
DB search
MLANPSGVRSTACYAQPSHFAFSGRCKLLSSFPNRPRFLSPKKTSKFCSLSLLLSRNGVR
CNSFAVKALVEPEVSESVAAAAGGAGAGGSGLLPPVSVKIPFGDREILIETGHIGRQASG
SVVATDGETIVYTSVCLSDVPSEPSDFFPLSVTYQERFSAAGRTSGGFFKREGKTKDNEV
LICRMIDRPLRPTMLKGFYHETQLLSWVLSYDGLHCPDALAVTAAGIAVALSEVPHSEAI
AGVRIGLLGDKFVVNPTTKEMEGSTLDLFLAGTDNAILMIEGYCDFLPEEKLLEAVQVGQ
GAVRQICSAVKALVTKCGKPKMLDAIRLPPPELYRLVEKIAGDELHNVLQIKSKIPRRKA
ISLLEEKVINRLTDKGYISIEGLSGSGETIQDLIDEEDEDEEIVVDGEVDEGDVHIKPVS
RKSTPLFTEVDVKLVFKEVSSKILRRRIVEGGKRSDGRSPEDIRPITSSCGLLPRAHGSA
LFTRGETQSLAVVTLGDKQMAQKLDNLANVEEFKRFYLQYSFPPSSVGEVGRMGAPSRRE
IGHGTLAERALERILPTEDAFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPLKCS
IAGIAMGLVLDTHEFGGDGTPLILSDITGAEDASGDMDFKVAGNEDGITAFQMDIKVEGI
TLPVMREALLQARDGRRRILAEMMKCSPPPAKSLSKYAPLIHIMKVAPEKVNMIIGSGGK
KVKSIIEETGVEAIDTQDDGIVKITAKDLSSLEKSKSIISSLTMVPTVGDIYRNCEIKSI
VPYGVFVEIAPGREGLCHISELTSDWLAKAEDAFKVGDRVDVKLIEVNDKGQLRLSRRAL
LPVPETSPEDPSSNPDVVVIADSGKASDEGAPQKYVSVPKAEGLAEEKIDRAKVKSSATK
VASSSKSNSAETTLLPRKKVFKRVKKSGSKAVTGVSSNDGE
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgctggcaaaccctagcggcgtacgaagcacggcgtgttatgctcaaccttcgcatttc
gctttctccggccgttgcaaacttctttcatcttttccaaatcgccctcgctttcttagt
cccaaaaaaacctctaagttttgctctctctcactgcttttatcgcgaaatggcgtcaga
tgtaacagctttgccgttaaagctttggtggagccggaagtttccgagtctgttgctgct
gctgccgggggagctggtgctggtggttctggtttactgccacctgtttctgtcaaaatt
ccctttggagatagagagattctgattgagacaggtcatatagggaggcaagctagtggt
tctgtggtggcaactgatggagaaacgattgtatacacatctgtttgtttgtcagatgtc
ccaagcgagccttctgattttttcccgcttagtgttacatatcaagaacgtttttcagca
gcaggtcgaactagtggtggtttctttaaacgcgaagggaagacaaaggacaatgaggtt
cttatttgtcggatgattgataggccattgcgcccaactatgcttaagggattctaccat
gaaactcagttactatcttgggttttgagttatgacggtttacactgtccagatgcttta
gcagttactgcagccggtatagcagtagcgctctctgaagtgccacactcagaagctatc
gcaggagttcgaattggtttacttggtgataaatttgttgtaaatccaacgacaaaggag
atggaaggctcaacacttgacctatttttggcaggcacggataatgctatattaatgata
gagggctattgtgattttctacctgaagaaaagttgcttgaagcagtacaagtagggcag
ggtgcagtgagacaaatctgcagcgctgtgaaggctttggttacgaagtgtgggaaaccc
aaaatgcttgatgctatcagattgccacctcctgagctttatcggctcgtggaaaaaata
gcaggtgacgaattgcataatgtacttcaaattaagagtaaaataccaagaagaaaggcc
atctcattgttagaagagaaagttattaacagactgacagataagggatatatcagcata
gagggcttatcaggatctggtgaaacaatacaagacttaattgatgaggaggatgaggat
gaagaaattgttgttgatggtgaagtagatgaaggtgatgtgcacataaagccggtttct
cgaaaatccactcctttgtttactgaggtagatgtgaagctggtatttaaggaggtttca
tccaaaatcttacggagacgtattgtggagggaggaaaaagaagcgatgggaggtctcca
gaagatatacgtccaatcacttcaagctgtggattgcttccaagggcacatggaagtgct
ctctttacacgtggggagacacagtcgctggcagtggtcacacttggtgataaacaaatg
gcacaaaaactggacaatctagcaaatgtagaggaattcaagaggttctatcttcagtac
tcgtttcctccatcaagtgttggagaggtcggacggatgggagctcctagtagaagagaa
attggacatggaactcttgcagagagagctcttgagcgtatattacctactgaagatgcg
tttccttacactatacgagttgaaagtaccattactgaaagcaatggttcctcaagtatg
gcatctgtttgtggaggttgcttggcattgcaagatgctggtgttcccctaaaatgctct
attgctgggattgcgatgggtttggttttagacacacatgaatttggaggagatggtaca
ccacttattctttctgacattactggagctgaagatgcttctggagatatggatttcaag
gttgctggaaatgaagatggcataactgcatttcagatggacataaaggtagaagggata
accttacctgttatgagagaggcactcctacaggcaagggatgggcgcaggcgtattcta
gctgaaatgatgaaatgttcccctccccctgcaaaaagtctctcgaagtatgctccactt
attcatatcatgaaggttgctccagagaaagttaacatgattataggttctggtgggaaa
aaggtaaaaagcattattgaagaaactggagtagaagctattgacacgcaagatgatgga
attgtaaaaatcactgcaaaagatctgtcaagtctggagaagtccaaatccattattagc
agcctgacgatggttccaactgttggtgatatatacaggaactgtgagatcaaatcaata
gttccatatggggttttcgttgagatagctccagggcgagagggactttgccacattagt
gagctgacgtcagactggttggccaaggctgaagatgcttttaaagttggtgatcgtgtt
gatgttaaacttatcgaggttaatgataagggacaacttcgccttagccgccgtgcactt
cttcctgttcctgaaacaagtccagaggatcccagttcaaacccagatgtggtggttatt
gctgattctggtaaagcatctgacgaaggtgcacctcaaaaatatgtcagtgtccccaaa
gcagagggtttagctgaagagaagattgatagggccaaggttaaaagtagtgctaccaaa
gttgcaagctcatccaaaagtaattctgcggagaccactctacttccacggaagaaggtt
tttaagagagtaaagaagagtggcagtaaagctgtcactggtgtctccagcaatgatggg
gagtag
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