Gossypium raimondii: 105804420
Help
Entry
105804420 CDS
T04129
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105804420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105804420
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
105804420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
105804420
NCBI-ProteinID:
XP_012492494
UniProt:
A0A0D2QZD8
LinkDB
All DBs
Position
11:17389811..17397468
Genome browser
AA seq
947 aa
AA seq
DB search
MMNDYDDQITMEAQSQPSENSQILQTLALGPLSSSLSSLSSSSPTLPSNQDFHFFNNFSD
FKLPIDQIAKTSDSLLESIGASAKTWGANKAINFPSNLDSIADDEAYDWLVDINDELLER
FDVSIDEFHKIRKKEEETGRFIGSDPDNNGFQLVYGKKKKINGGLVSDSVGVSVSGKEGG
FSGSSGVKVKKEALATGTTGKAKVPFHIPTIRKPQEEYNILVNNSNQPFEHVWLQRSEDG
QRFVHPLENLSVMDFVEKDIADIQPIKPPSMESTSFKLVEEVKDLKDLAAKLRGVEEFAV
DLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIHVGPYLREVFKDPTKKKVMHGADRD
IVWLQRDFGIYVCNLFDTGQASKVLKLERNSLEHLLQHFCGVTANKEYQNADWILRPLPD
EMLRYAREDTHYLLYIYDLMRIKLFSMPQEGEHLDAPLVEVYKRSSDVCTQLYGKELLTE
NSYLHIHGLQVAGFNAEQLAVVAGLCEWRDIIARAEDESTGYVLPNKTLLEIAKQMPVAA
HKLRQLLKSRHPYVERNLGAVVSIIRHAMQNAVAFEAAAQQLKMGRMLNASEQHIAAKEG
AEVLIPVTPTDFKTANDRTRIIDDAVVGPDGISAQSASLQHKHDSIKIGSSITQLDRDKK
QEGFSFEPHVNGSSMYARENLVISGKSGDANAHTVIPPSTKMATGATIQVLKKPSRGFGA
LLGNASTKMKFDMEKKEKEDSKLAQIRSSVNLSFHSFSGTAEQSKPPVNEPTKFPEAPQP
KEPPAVVATESSTLEDIIMLEDNSRKDEQVDGSGSPEVNDTPGKESCMAPSSETEKEDET
MSLSDLSTSFQQCFESMNQNRKAVKVKKSKEASGVLQIKPFDYEAARKEIKFGEDAETES
GSHAKSGGKKKSSAMGRLQIDDGSKQFPQARRRQAFPASGNRSATFR
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacgactacgacgatcagataacaatggaagcccaatctcaaccttcagaaaat
tctcaaattcttcaaacattagctctaggccctctctcttcttctctttcttcactctct
tcctcttctccaaccctcccttccaatcaagactttcatttcttcaacaacttctccgat
ttcaagcttcccatcgatcaaatcgccaaaacatccgattctttgctcgaatccattggc
gcttcggctaaaacatggggcgccaacaaggccatcaatttccctagcaaccttgacagc
atagccgatgatgaagcttatgattggctcgttgatattaacgacgaacttttggaacga
tttgacgtttccatcgacgaatttcataagattcgaaagaaagaagaggaaacgggtcgg
tttattgggtcggatcctgacaataatgggtttcagttggtttacgggaagaagaagaaa
attaacggtggtttagtgagtgactcggttggtgtgtcagtcagtgggaaggaaggtggg
ttttcgggttcttctggagttaaggtgaagaaagaggcattggctacggggacgactggg
aaagcgaaggtgccatttcatataccaacgatacggaagcctcaggaagagtataatata
cttgtgaataattcgaatcagccttttgaacatgtttggttgcagaggagtgaggatggg
cagcgttttgttcatccactggagaacctctctgttatggattttgtggaaaaagatatt
gcagatattcagcccatcaaacccccatcaatggagtctacctcatttaagctggttgag
gaagtaaaagatttgaaggatttagcagctaagttacgcggtgtggaagagtttgcggtt
gatttggagcataaccaatatcgatcttttcaaggactaacttgcttgatgcaaatttct
actagaactgaggattttattgtagatactttgaagcttcgaattcatgttggcccatat
cttagggaagttttcaaggatcccaccaagaaaaaggttatgcatggagcagacagggat
attgtgtggcttcaacgagactttggcatatatgtgtgcaatctctttgacactggacag
gcctcaaaggtcttgaaattggaaagaaatagtttggagcatcttctgcaacatttttgt
ggagttacagccaacaaagagtaccagaatgcagattggatattgcgtcctcttcctgat
gaaatgctcagatatgctagagaagacacacactacttactgtacatttatgatttaatg
agaatcaaattgttttcaatgccccaggaaggtgaacatttggatgctcctttggtagag
gtctacaagcgaagttctgatgtatgtacacaactgtatgggaaagagctcctgacagag
aattcatatctccatatacatgggttgcaggtggctggtttcaatgctgagcagctagca
gttgttgctgggctttgtgaatggcgagacattattgctcgtgcagaggatgaaagtact
ggttatgtattgccaaacaaaacgcttcttgaaatcgccaagcagatgcctgtagctgct
cacaagttacgtcaattgttgaaatctagacacccatatgtggagcgaaatcttggtgca
gttgttagcatcatcaggcatgctatgcagaatgctgttgcatttgaagctgctgctcaa
caacttaaaatgggacgtatgctaaatgcatcagaacaacatatagcagctaaagaggga
gctgaggtcttaattcctgtgactcctacagactttaaaactgcaaatgatagaacaaga
atcatagatgatgctgtagtaggacctgatgggataagtgctcaatctgcttctctgcaa
cataaacacgactcgatcaagattggaagcagtattactcaacttgacagagacaaaaaa
caagaaggattctcttttgagccacatgtgaatggtagctcaatgtatgcgagagaaaat
cttgtcatctcgggaaagagtggagatgcaaatgcccatacagttattccaccttcaaca
aagatggcaactggagcaactattcaggttctaaagaaaccaagccgtggctttggagca
cttctggggaatgcttccacgaagatgaaatttgatatggagaaaaaggagaaggaagat
agtaagttggcacagatcagatcttcagtaaatctttcatttcactcattctcgggcaca
gcagagcagtcaaaacctcctgttaacgagccaactaaatttccagaagctccacagccc
aaagaacctcctgctgtggtagctactgagtcgtcgacattagaagatattatcatgtta
gaagataattcaagaaaggatgaacaagttgatggtagtggtagtccggaagtaaatgat
acacctgggaaggagagttgtatggcaccttcctctgaaacggaaaaagaagatgagact
atgtctttatccgatttatctaccagcttccaacagtgcttcgagtctatgaatcaaaac
agaaaagcagttaaagtgaagaaatcaaaagaagctagtggtgttttgcaaataaagcca
tttgattatgaagcagccaggaaagagattaagtttggagaagatgcagagacagaatca
ggaagccatgcaaagtctggtggtaagaagaaaagttcagcaatggggcgactgcaaata
gacgatggatctaaacaatttcctcaagctaggcgacgacaagcttttcctgcatctggg
aacagaagtgcaactttccgatga
DBGET
integrated database retrieval system
